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5ARK

crystal structure of porcine RNase 4 in complex with dUMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
B0003676molecular_functionnucleic acid binding
C0003676molecular_functionnucleic acid binding
D0003676molecular_functionnucleic acid binding
Functional Information from PDB Data
site_idAC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE UMP A 1120
ChainResidue
AARG7
ALYS119
AGLN11
AHIS12
ALYS40
APHE42
AASN43
ATHR44
AHIS116
APHE117

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE UMP B 1120
ChainResidue
BARG7
BGLN11
BHIS12
BLYS40
BPHE42
BASN43
BTHR44
BHIS116
BPHE117
BLYS119
BHOH2004
CTRP51
CPRO111

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE UMP C 1120
ChainResidue
CARG7
CGLN11
CHIS12
CLYS40
CPHE42
CTHR44
CHIS116
CPHE117
CASP118
CLYS119
CHOH2004
CHOH2005

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE UMP D 1120
ChainResidue
ASER55
DARG7
DGLN11
DHIS12
DLYS40
DPHE42
DHIS116
DPHE117
DASP118
DHOH2006

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 B 1121
ChainResidue
BARG31
BARG32
DARG31
DARG32

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A 1121
ChainResidue
AARG31
AARG32
AHOH2009
CARG31
CARG32

Functional Information from PROSITE/UniProt
site_idPS00127
Number of Residues7
DetailsRNASE_PANCREATIC Pancreatic ribonuclease family signature. CKrfNTF
ChainResidueDetails
ACYS39-PHE45

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"Q9H1E1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"Q9H1E1","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"26748441","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5ARK","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"Pyrrolidone carboxylic acid","evidences":[{"source":"UniProtKB","id":"P15467","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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