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5AK8

Structure of C351A mutant of Porphyromonas gingivalis peptidylarginine deiminase

Functional Information from GO Data
ChainGOidnamespacecontents
A0004668molecular_functionprotein-arginine deiminase activity
A0009446biological_processputrescine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 1466
ChainResidue
AASP147
APHE148
AASP158
AHOH2114
AHOH2134

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1467
ChainResidue
ATYR449
AHOH2023
AHOH2363
ATYR61
AGLU62
APRO246
ATYR361

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1468
ChainResidue
ASER125
ATYR126
ATRP127
AEDO1472

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1469
ChainResidue
ALYS248
AGLU283
ATYR285
AALA326
APRO328
AASP456
AEDO1474
AHOH2291

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1470
ChainResidue
AILE58
AGLU60
AARG129
AMET185
ATHR186
AGLU355
AHOH2019
AHOH2021

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1471
ChainResidue
ALYS365
ATYR367
AGLU381
AASP383
AHIS419
AHOH2366
AHOH2455

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1472
ChainResidue
AARG70
ATYR126
AEDO1468
AHOH2041

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1473
ChainResidue
ALYS176
AASN202
AHOH2209
AHOH2211

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1474
ChainResidue
AASN247
APRO450
AASP456
APRO457
APHE458
AEDO1469
AEDO1483
AHOH2291

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1475
ChainResidue
APRO54
AARG56
ATYR138
ATHR140
ATYR363
AHOH2457

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1476
ChainResidue
ATYR270
AHOH2236
AHOH2273

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1477
ChainResidue
ATYR399
ATYR422
APHE424
ATHR425
ALEU427

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1478
ChainResidue
AASP117
APHE118
ATYR167
ALYS281
AHOH2283
AHOH2458

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1479
ChainResidue
AARG63
AARG445
ALYS446
AGLU447

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1480
ChainResidue
APRO455
ALYS459
AHOH2430

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1481
ChainResidue
AALA409
AALA410
AASP411

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1482
ChainResidue
APRO54
AVAL55
ALYS215
AGLY219
ATHR221
AHOH2230

site_idBC9
Number of Residues11
DetailsBINDING SITE FOR RESIDUE EDO A 1483
ChainResidue
AHOH2258
AHOH2329
AHOH2461
AALA245
AASN247
ALYS248
ATRP278
APRO450
AILE452
AASP456
AEDO1474

site_idCC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1484
ChainResidue
AASP228
AASN230
AGLY231
AGLU232
AILE234
AASN235
AHOH2242
AHOH2244

site_idCC2
Number of Residues14
DetailsBinding site for Di-peptide ALA A1001 and ARG A1002
ChainResidue
ATRP127
AASP130
AARG152
AARG154
AGLY182
ATYR233
AILE234
AHIS236
AASP238
ATHR346
AALA351
AHOH2113
AHOH2355
AHOH2462

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Amidino-cysteine intermediate => ECO:0000250
ChainResidueDetails
AALA351

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PDB entries from 2024-07-17

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