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5AK7

Structure of wt Porphyromonas gingivalis peptidylarginine deiminase

Functional Information from GO Data
ChainGOidnamespacecontents
A0004668molecular_functionprotein-arginine deiminase activity
A0009446biological_processputrescine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1466
ChainResidue
ASER125
ATYR126
ATRP127
AEDO1480

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1467
ChainResidue
AHOH2029
AHOH2375
ATYR61
AGLU62
APRO246
ATYR361
ATYR449

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1468
ChainResidue
ALYS248
AGLU283
ATYR285
AASP456
AHOH2308

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO A 1469
ChainResidue
AASN247
APRO450
AASP456
APRO457
AHOH2267
AHOH2269
AHOH2308

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EDO A 1470
ChainResidue
ALYS365
ATYR367
AGLU381
AASP383
AHIS419
AHOH2379
AHOH2397
AHOH2478

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1471
ChainResidue
AASN202
ALEU205
AHOH2214

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1472
ChainResidue
ATYR399
ATYR422
APHE424
ATHR425

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1473
ChainResidue
APRO54
ATHR140
AHOH2479

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1474
ChainResidue
APRO328
APRO455
ALYS459
AHOH2453
AHOH2473

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EDO A 1475
ChainResidue
ALYS213

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1476
ChainResidue
ATYR270
AHOH2244
AHOH2289
AHOH2480

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE EDO A 1477
ChainResidue
ASER114
ASER191
AGLN274
ATHR275
ACYS276
AALA277
ATYR282
AHOH2096
AHOH2196

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1478
ChainResidue
AASP117
APHE118
ATYR167
ALYS281
AHOH2099

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO A 1479
ChainResidue
AASN211
ATHR221
AHIS222
AHIS223
AHOH2229

site_idBC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1480
ChainResidue
AARG70
ATYR126
AEDO1466
AHOH2048

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1481
ChainResidue
AVAL284
ATYR285
AHOH2306

site_idBC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 1482
ChainResidue
ASER203
ASER204
ASER206

site_idBC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA A 1483
ChainResidue
AASP147
APHE148
AASP158
AHOH2123
AHOH2143

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ALA A 1001
ChainResidue
ATRP127
AARG154
ATYR233
AARG1002

site_idCC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE ARG A 1002
ChainResidue
ACYS351
AALA1001
AHOH2122
AHOH2259
AHOH2368
ATRP127
AASP130
AARG152
AARG154
AGLY182
ATYR233
AILE234
AHIS236
AASP238
ATHR346

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Amidino-cysteine intermediate => ECO:0000250
ChainResidueDetails
ACYS351

238268

PDB entries from 2025-07-02

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