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5A5F

CRYSTAL STRUCTURE OF MURD LIGASE FROM ESCHERICHIA COLI IN COMPLEX WITH UMA AND ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008360biological_processregulation of cell shape
A0008764molecular_functionUDP-N-acetylmuramoylalanine-D-glutamate ligase activity
A0009058biological_processbiosynthetic process
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0016881molecular_functionacid-amino acid ligase activity
A0042802molecular_functionidentical protein binding
A0051301biological_processcell division
A0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE UMA A 450
ChainResidue
AGLY14
AGLY137
AASN138
AGLY140
ASER159
AGLN162
AHIS183
AHOH2009
AHOH2010
AHOH2012
AHOH2059
ALEU15
AHOH2071
AHOH2095
AHOH2265
AHOH2266
AHOH2267
ATHR16
AASP35
ATHR36
AARG37
ASER71
APRO72
AGLY73

site_idAC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE ADP A 451
ChainResidue
AASN113
AGLY114
ALYS115
ASER116
ATHR117
AASN178
AHIS267
AASN271
AARG302
APHE303
AASP317
ALYS319
AALA320
ASER325
AALA328
AHOH2068
AHOH2071
AHOH2072
AHOH2074
AHOH2119
AHOH2184
AHOH2268

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MLI A 500
ChainResidue
ATHR321
AALA414
ASER415
AASN421
APHE422
AHOH2212

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MLI A 501
ChainResidue
AHIS241
ATHR246
AHIS334
AHOH2181
AHOH2269

Functional Information from PROSITE/UniProt
site_idPS00012
Number of Residues16
DetailsPHOSPHOPANTETHEINE Phosphopantetheine attachment site. GSNGKSTVTTLVGEMA
ChainResidueDetails
AGLY111-ALA126

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255
ChainResidueDetails
AGLY111

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 317
ChainResidueDetails
ALYS115activator, attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor, increase electrophilicity
AASN138electrostatic stabiliser, hydrogen bond donor, steric role
AHIS183hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor, steric role

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PDB entries from 2024-07-17

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