4ZP1
Crystal structure of Zymomonas mobilis pyruvate decarboxylase variant Glu473Ala
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0000949 | biological_process | aromatic amino acid family catabolic process to alcohol via Ehrlich pathway |
A | 0003824 | molecular_function | catalytic activity |
A | 0004737 | molecular_function | pyruvate decarboxylase activity |
A | 0005829 | cellular_component | cytosol |
A | 0016831 | molecular_function | carboxy-lyase activity |
A | 0019752 | biological_process | carboxylic acid metabolic process |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0046872 | molecular_function | metal ion binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0000949 | biological_process | aromatic amino acid family catabolic process to alcohol via Ehrlich pathway |
B | 0003824 | molecular_function | catalytic activity |
B | 0004737 | molecular_function | pyruvate decarboxylase activity |
B | 0005829 | cellular_component | cytosol |
B | 0016831 | molecular_function | carboxy-lyase activity |
B | 0019752 | biological_process | carboxylic acid metabolic process |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0046872 | molecular_function | metal ion binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0000949 | biological_process | aromatic amino acid family catabolic process to alcohol via Ehrlich pathway |
C | 0003824 | molecular_function | catalytic activity |
C | 0004737 | molecular_function | pyruvate decarboxylase activity |
C | 0005829 | cellular_component | cytosol |
C | 0016831 | molecular_function | carboxy-lyase activity |
C | 0019752 | biological_process | carboxylic acid metabolic process |
C | 0030976 | molecular_function | thiamine pyrophosphate binding |
C | 0046872 | molecular_function | metal ion binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0000949 | biological_process | aromatic amino acid family catabolic process to alcohol via Ehrlich pathway |
D | 0003824 | molecular_function | catalytic activity |
D | 0004737 | molecular_function | pyruvate decarboxylase activity |
D | 0005829 | cellular_component | cytosol |
D | 0016831 | molecular_function | carboxy-lyase activity |
D | 0019752 | biological_process | carboxylic acid metabolic process |
D | 0030976 | molecular_function | thiamine pyrophosphate binding |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue MG A 601 |
Chain | Residue |
A | ASP440 |
A | ASN467 |
A | GLY469 |
A | TPP603 |
A | HOH795 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue NI A 602 |
Chain | Residue |
A | HIS106 |
A | HIS122 |
C | HIS106 |
C | HIS122 |
site_id | AC3 |
Number of Residues | 22 |
Details | binding site for residue TPP A 603 |
Chain | Residue |
A | ASP390 |
A | GLY413 |
A | HIS414 |
A | ILE415 |
A | GLY439 |
A | ASP440 |
A | GLY441 |
A | SER442 |
A | ASN467 |
A | GLY469 |
A | TYR470 |
A | THR471 |
A | ILE472 |
A | MG601 |
A | HOH727 |
A | HOH795 |
A | HOH801 |
B | ALA25 |
B | GLY26 |
B | GLU50 |
B | VAL75 |
B | HIS114 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue MG B 601 |
Chain | Residue |
B | ASP440 |
B | ASN467 |
B | GLY469 |
B | TPP604 |
B | HOH713 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue NI B 602 |
Chain | Residue |
B | HIS106 |
B | HIS122 |
B | HOH811 |
D | HIS106 |
D | HIS122 |
site_id | AC6 |
Number of Residues | 9 |
Details | binding site for residue GOL B 603 |
Chain | Residue |
B | ALA89 |
B | GLU90 |
B | ASN91 |
B | SER218 |
B | ALA245 |
B | TYR408 |
B | MET410 |
B | GLN411 |
B | HOH714 |
site_id | AC7 |
Number of Residues | 21 |
Details | binding site for residue TPP B 604 |
Chain | Residue |
A | ALA25 |
A | GLY26 |
A | GLU50 |
A | VAL75 |
A | HIS114 |
B | GLY389 |
B | ASP390 |
B | GLY413 |
B | HIS414 |
B | ILE415 |
B | GLY439 |
B | ASP440 |
B | GLY441 |
B | SER442 |
B | ASN467 |
B | GLY469 |
B | TYR470 |
B | THR471 |
B | ILE472 |
B | MG601 |
B | HOH713 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MG C 601 |
Chain | Residue |
C | ASP440 |
C | ASN467 |
C | GLY469 |
C | TPP603 |
C | HOH751 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue GOL C 602 |
Chain | Residue |
C | TYR425 |
C | ALA429 |
C | GLU431 |
site_id | AD1 |
Number of Residues | 23 |
Details | binding site for residue TPP C 603 |
Chain | Residue |
D | GLU50 |
D | VAL75 |
D | HIS114 |
C | GLY389 |
C | ASP390 |
C | GLY413 |
C | HIS414 |
C | ILE415 |
C | GLY439 |
C | ASP440 |
C | GLY441 |
C | SER442 |
C | ASN467 |
C | GLY469 |
C | TYR470 |
C | THR471 |
C | ILE472 |
C | MG601 |
C | HOH751 |
C | HOH776 |
C | HOH827 |
D | ALA25 |
D | GLY26 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue MG D 601 |
Chain | Residue |
D | ASP440 |
D | ASN467 |
D | GLY469 |
D | TPP602 |
site_id | AD3 |
Number of Residues | 20 |
Details | binding site for residue TPP D 602 |
Chain | Residue |
C | ALA25 |
C | GLU50 |
C | VAL75 |
C | HIS114 |
D | GLY389 |
D | ASP390 |
D | GLY413 |
D | HIS414 |
D | ILE415 |
D | GLY439 |
D | ASP440 |
D | GLY441 |
D | SER442 |
D | ASN467 |
D | GLY469 |
D | TYR470 |
D | THR471 |
D | ILE472 |
D | MG601 |
D | HOH794 |
Functional Information from PROSITE/UniProt
site_id | PS00187 |
Number of Residues | 20 |
Details | TPP_ENZYMES Thiamine pyrophosphate enzymes signature. FGyavgaPerrnIlMvGDGS |
Chain | Residue | Details |
A | PHE423-SER442 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | ASP27 | |
D | ASP27 | |
D | HIS114 | |
D | ALA473 | |
A | HIS114 | |
A | ALA473 | |
B | ASP27 | |
B | HIS114 | |
B | ALA473 | |
C | ASP27 | |
C | HIS114 | |
C | ALA473 |
site_id | SWS_FT_FI2 |
Number of Residues | 16 |
Details | BINDING: |
Chain | Residue | Details |
A | GLU50 | |
C | ASP440 | |
C | ASN467 | |
C | GLY469 | |
D | GLU50 | |
D | ASP440 | |
D | ASN467 | |
D | GLY469 | |
A | ASP440 | |
A | ASN467 | |
A | GLY469 | |
B | GLU50 | |
B | ASP440 | |
B | ASN467 | |
B | GLY469 | |
C | GLU50 |