4ZFZ

Crystal structure of rhesus macaque MHC class I molecule Mamu-B*098 complexed with myristoylated 5-mer lipopeptide derived from SIV Nef protein

Functional Information from GO Data

Chain	GOid	namespace	contents
B	0006955	biological_process	immune response
B	0042612	cellular_component	MHC class I protein complex
E	0006955	biological_process	immune response
E	0042612	cellular_component	MHC class I protein complex
H	0006955	biological_process	immune response
H	0042612	cellular_component	MHC class I protein complex
K	0006955	biological_process	immune response
K	0042612	cellular_component	MHC class I protein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	binding site for residue ZN A 301

Chain	Residue
A	HIS191
A	ALA199
A	GLU254
G	GLU58
G	GLU61

---

site_id	AC2
Number of Residues	5
Details	binding site for residue ZN A 302

Chain	Residue
G	GLU254
A	GLU58
A	GLU61
G	HIS191
G	ALA199

---

site_id	AC3
Number of Residues	3
Details	binding site for residue ZN A 303

Chain	Residue
A	HIS192
B	ASP98
B	HOH253

---

site_id	AC4
Number of Residues	4
Details	binding site for residue ZN A 304

Chain	Residue
A	ALA0
A	HIS3
A	GLN180
J	GLU138

---

site_id	AC5
Number of Residues	7
Details	binding site for residue EDO A 305

Chain	Residue
A	ALA0
A	HIS3
A	LEU179
A	GLN180
A	GLU264
A	TRS314
A	HOH409

---

site_id	AC6
Number of Residues	6
Details	binding site for residue EDO A 306

Chain	Residue
A	GLY1
A	GLY104
A	PRO105
A	HOH472
J	ASP137
J	GLU138

---

site_id	AC7
Number of Residues	7
Details	binding site for residue EDO A 307

Chain	Residue
A	TYR7
A	GLN63
A	TYR159
A	GLU163
A	SER167
A	TYR171
C	MYR101

---

site_id	AC8
Number of Residues	3
Details	binding site for residue EDO A 308

Chain	Residue
A	PHE8
A	ASP30
A	HOH479

---

site_id	AC9
Number of Residues	4
Details	binding site for residue EDO A 309

Chain	Residue
A	ARG35
A	GLU46
A	PRO47
A	ARG48

---

site_id	AD1
Number of Residues	5
Details	binding site for residue EDO A 310

Chain	Residue
A	ARG108
A	LEU109
A	GLU161
A	LEU165
A	HOH502

---

site_id	AD2
Number of Residues	4
Details	binding site for residue EDO A 311

Chain	Residue
A	GLY237
A	HOH403
A	HOH461
B	SER52

---

site_id	AD3
Number of Residues	4
Details	binding site for residue EDO A 312

Chain	Residue
A	ARG6
A	MET98
A	TYR113
B	EDO103

---

site_id	AD4
Number of Residues	4
Details	binding site for residue EDO A 313

Chain	Residue
A	PRO15
A	GLY16
A	ARG17
A	GLY18

---

site_id	AD5
Number of Residues	10
Details	binding site for residue TRS A 314

Chain	Residue
A	ALA0
A	SER2
A	HIS3
A	SER4
A	ASP29
A	PRO210
A	GLU264
A	EDO305
A	HOH456
A	HOH467

---

site_id	AD6
Number of Residues	1
Details	binding site for residue CL A 315

Chain	Residue
A	ARG75

---

site_id	AD7
Number of Residues	3
Details	binding site for residue ZN B 101

Chain	Residue
B	HIS51
B	EDO109
B	HOH257

---

site_id	AD8
Number of Residues	4
Details	binding site for residue ZN B 102

Chain	Residue
B	GLU36
B	EDO108
B	HOH211
D	HIS197

---

site_id	AD9
Number of Residues	7
Details	binding site for residue EDO B 103

Chain	Residue
A	PHE8
A	MET98
A	EDO312
B	SER57
B	LYS58
B	TRP60
B	HOH216

---

site_id	AE1
Number of Residues	5
Details	binding site for residue EDO B 104

Chain	Residue
A	ARG21
A	ILE23
B	SER33
B	ASP34
B	HOH202

---

site_id	AE2
Number of Residues	5
Details	binding site for residue EDO B 105

Chain	Residue
B	GLN8
B	VAL9
B	LYS94
B	ASP96
B	HOH242

---

site_id	AE3
Number of Residues	3
Details	binding site for residue EDO B 106

Chain	Residue
A	TRP204
B	MET99
B	EDO107

---

site_id	AE4
Number of Residues	9
Details	binding site for residue EDO B 107

Chain	Residue
A	TRP204
A	LEU206
A	ARG234
A	GLN242
B	TYR10
B	SER11
B	HIS13
B	PRO14
B	EDO106

---

site_id	AE5
Number of Residues	5
Details	binding site for residue EDO B 108

Chain	Residue
B	GLU36
B	ZN102
D	ASP196
D	HIS197
J	GLN54

---

site_id	AE6
Number of Residues	4
Details	binding site for residue EDO B 109

Chain	Residue
A	ARG21
B	HIS51
B	ZN101
B	HOH234

---

site_id	AE7
Number of Residues	10
Details	binding site for residue MYR C 101

Chain	Residue
A	GLN63
A	ARG66
A	ALA70
A	PHE74
A	TYR114
A	TYR159
A	EDO307
A	HOH417
A	HOH438
C	GLY2

---

site_id	AE8
Number of Residues	5
Details	binding site for residue ZN D 301

Chain	Residue
D	HIS191
D	ALA199
D	GLU254
J	GLU58
J	GLU61

---

site_id	AE9
Number of Residues	3
Details	binding site for residue ZN D 302

Chain	Residue
D	HIS192
E	ASP98
E	HOH255

---

site_id	AF1
Number of Residues	4
Details	binding site for residue ZN D 303

Chain	Residue
D	ALA0
D	HIS3
D	GLN180
G	GLU138

---

site_id	AF2
Number of Residues	6
Details	binding site for residue EDO D 304

Chain	Residue
D	ALA0
D	LEU179
D	GLN180
D	GLU264
D	TRS312
D	HOH413

---

site_id	AF3
Number of Residues	4
Details	binding site for residue EDO D 305

Chain	Residue
D	TYR27
D	ASP29
D	ASP30
D	HOH464

---

site_id	AF4
Number of Residues	7
Details	binding site for residue EDO D 306

Chain	Residue
D	TYR7
D	GLN63
D	TYR159
D	GLU163
D	SER167
D	TYR171
F	MYR101

---

site_id	AF5
Number of Residues	4
Details	binding site for residue EDO D 307

Chain	Residue
D	GLY237
D	EDO309
D	HOH460
E	SER52

---

site_id	AF6
Number of Residues	2
Details	binding site for residue EDO D 308

Chain	Residue
D	HOH405
J	ASP196

---

site_id	AF7
Number of Residues	6
Details	binding site for residue EDO D 309

Chain	Residue
D	TYR27
D	PRO235
D	EDO307
E	SER52
E	TYR63
E	HOH212

---

site_id	AF8
Number of Residues	2
Details	binding site for residue EDO D 310

Chain	Residue
D	PRO47
D	ARG48

---

site_id	AF9
Number of Residues	3
Details	binding site for residue EDO D 311

Chain	Residue
D	ARG6
D	TYR113
E	EDO103

---

site_id	AG1
Number of Residues	11
Details	binding site for residue TRS D 312

Chain	Residue
D	ALA0
D	SER2
D	HIS3
D	SER4
D	ASP29
D	PRO210
D	GLU264
D	EDO304
D	HOH415
D	HOH469
D	HOH511

---

site_id	AG2
Number of Residues	3
Details	binding site for residue ZN E 101

Chain	Residue
E	HIS51
E	EDO108
E	HOH256

---

site_id	AG3
Number of Residues	5
Details	binding site for residue ZN E 102

Chain	Residue
A	HIS197
E	GLU36
E	EDO109
E	HOH202
E	HOH222

---

site_id	AG4
Number of Residues	5
Details	binding site for residue EDO E 103

Chain	Residue
D	EDO311
E	SER57
E	LYS58
E	TRP60
E	HOH231

---

site_id	AG5
Number of Residues	9
Details	binding site for residue EDO E 104

Chain	Residue
D	TRP204
D	LEU206
D	ARG234
D	GLN242
E	TYR10
E	SER11
E	HIS13
E	PRO14
E	EDO105

---

site_id	AG6
Number of Residues	2
Details	binding site for residue EDO E 105

Chain	Residue
E	MET99
E	EDO104

---

site_id	AG7
Number of Residues	4
Details	binding site for residue EDO E 106

Chain	Residue
D	ARG21
E	SER33
E	ASP34
E	EDO107

---

site_id	AG8
Number of Residues	7
Details	binding site for residue EDO E 107

Chain	Residue
D	ILE23
E	HIS51
E	SER52
E	ASP53
E	LEU54
E	EDO106
E	EDO108

---

site_id	AG9
Number of Residues	5
Details	binding site for residue EDO E 108

Chain	Residue
D	ARG21
E	HIS51
E	ZN101
E	EDO107
E	HOH241

---

site_id	AH1
Number of Residues	7
Details	binding site for residue EDO E 109

Chain	Residue
A	HIS197
E	GLU36
E	ZN102
E	HOH222
G	GLN54
G	GLU55
G	GLY56

---

site_id	AH2
Number of Residues	2
Details	binding site for residue ZN G 301

Chain	Residue
G	HIS192
H	ASP98

---

site_id	AH3
Number of Residues	5
Details	binding site for residue ZN G 302

Chain	Residue
D	GLU138
G	ALA0
G	HIS3
G	EDO311
G	HOH409

---

site_id	AH4
Number of Residues	6
Details	binding site for residue EDO G 303

Chain	Residue
G	TYR7
G	GLN63
G	TYR159
G	SER167
G	TYR171
G	HOH428

---

site_id	AH5
Number of Residues	9
Details	binding site for residue EDO G 304

Chain	Residue
G	ASP122
G	TYR123
G	ILE124
G	ALA125
G	THR134
G	ALA136
G	HOH416
G	HOH431
G	HOH479

---

site_id	AH6
Number of Residues	5
Details	binding site for residue EDO G 305

Chain	Residue
G	PHE8
G	TYR27
G	ASP29
G	ASP30
H	HOH810

---

site_id	AH7
Number of Residues	7
Details	binding site for residue EDO G 306

Chain	Residue
D	GLY1
D	GLY104
D	PRO105
G	ASP137
G	GLU138
G	HOH444
G	HOH459

---

site_id	AH8
Number of Residues	5
Details	binding site for residue EDO G 307

Chain	Residue
G	THR178
G	ARG181
G	GLU183
G	GLY239
G	HOH417

---

site_id	AH9
Number of Residues	6
Details	binding site for residue EDO G 308

Chain	Residue
G	GLY207
G	ASP238
G	THR240
G	GLN242
G	HOH424
H	ARG12

---

site_id	AI1
Number of Residues	7
Details	binding site for residue EDO G 309

Chain	Residue
G	ALA0
G	HIS3
G	ASP29
G	LEU179
G	ARG181
G	GLU264
G	HOH409

---

site_id	AI2
Number of Residues	5
Details	binding site for residue EDO G 310

Chain	Residue
G	GLU212
G	THR214
G	GLN262
G	HIS263
G	GLU264

---

site_id	AI3
Number of Residues	6
Details	binding site for residue EDO G 311

Chain	Residue
D	GLU138
G	ALA0
G	HIS3
G	GLN180
G	ZN302
G	HOH409

---

site_id	AI4
Number of Residues	5
Details	binding site for residue EDO G 312

Chain	Residue
G	TYR85
G	ARG121
G	ASP122
G	ASP137
G	HOH430

---

site_id	AI5
Number of Residues	4
Details	binding site for residue EDO G 313

Chain	Residue
D	ASP106
G	GLN87
G	TYR118
G	ASP119

---

site_id	AI6
Number of Residues	1
Details	binding site for residue CL G 314

Chain	Residue
G	ARG75

---

site_id	AI7
Number of Residues	4
Details	binding site for residue ZN H 101

Chain	Residue
H	HIS51
H	EDO106
H	HOH836
H	HOH840

---

site_id	AI8
Number of Residues	6
Details	binding site for residue EDO H 102

Chain	Residue
G	PHE8
G	MET98
H	SER57
H	LYS58
H	TRP60
H	HOH811

---

site_id	AI9
Number of Residues	3
Details	binding site for residue EDO H 103

Chain	Residue
G	ARG21
H	SER33
H	ASP34

---

site_id	AJ1
Number of Residues	7
Details	binding site for residue EDO H 104

Chain	Residue
G	ARG234
G	GLN242
H	TYR10
H	SER11
H	HIS13
H	PRO14
H	MET99

---

site_id	AJ2
Number of Residues	6
Details	binding site for residue EDO H 105

Chain	Residue
H	GLU36
H	ASP38
H	ARG81
H	ASN83
H	PRO90
H	HOH809

---

site_id	AJ3
Number of Residues	2
Details	binding site for residue EDO H 106

Chain	Residue
H	HIS51
H	ZN101

---

site_id	AJ4
Number of Residues	5
Details	binding site for residue ZN J 301

Chain	Residue
D	GLU58
D	GLU61
J	HIS191
J	ALA199
J	GLU254

---

site_id	AJ5
Number of Residues	5
Details	binding site for residue ZN J 302

Chain	Residue
A	GLU138
A	HOH401
J	ALA0
J	HIS3
J	EDO314

---

site_id	AJ6
Number of Residues	4
Details	binding site for residue EDO J 303

Chain	Residue
J	TYR27
J	ASP29
J	ASP30
K	HOH213

---

site_id	AJ7
Number of Residues	8
Details	binding site for residue EDO J 304

Chain	Residue
J	ASP122
J	TYR123
J	ILE124
J	ALA125
J	THR134
J	ALA136
J	HOH414
J	HOH454

---

site_id	AJ8
Number of Residues	6
Details	binding site for residue EDO J 305

Chain	Residue
J	GLY207
J	ASP238
J	THR240
J	GLN242
J	HOH456
K	ARG12

---

site_id	AJ9
Number of Residues	8
Details	binding site for residue EDO J 306

Chain	Residue
J	TRP204
J	ARG234
J	TRP244
J	HOH448
K	VAL9
K	TYR10
K	ASP96
K	EDO107

---

site_id	AK1
Number of Residues	7
Details	binding site for residue EDO J 307

Chain	Residue
A	ASP106
J	GLN87
J	TYR118
J	ASP119
J	ARG121
J	HOH426
J	HOH468

---

site_id	AK2
Number of Residues	5
Details	binding site for residue EDO J 308

Chain	Residue
J	TYR7
J	TYR159
J	SER167
J	TYR171
J	HOH441

---

site_id	AK3
Number of Residues	6
Details	binding site for residue EDO J 309

Chain	Residue
J	ALA0
J	SER2
J	ASP29
J	GLU264
J	EDO310
J	HOH432

---

site_id	AK4
Number of Residues	8
Details	binding site for residue EDO J 310

Chain	Residue
A	HOH401
J	ALA0
J	HIS3
J	ASP29
J	LEU179
J	ARG181
J	GLU264
J	EDO309

---

site_id	AK5
Number of Residues	4
Details	binding site for residue EDO J 311

Chain	Residue
J	ALA136
J	ASP137
J	HOH415
J	HOH435

---

site_id	AK6
Number of Residues	2
Details	binding site for residue EDO J 312

Chain	Residue
J	ARG48
J	HOH520

---

site_id	AK7
Number of Residues	3
Details	binding site for residue EDO J 313

Chain	Residue
J	GLN115
J	ASP122
K	LYS58

---

site_id	AK8
Number of Residues	6
Details	binding site for residue EDO J 314

Chain	Residue
A	GLU138
A	HOH401
J	ALA0
J	HIS3
J	GLN180
J	ZN302

---

site_id	AK9
Number of Residues	1
Details	binding site for residue CL J 315

Chain	Residue
J	ARG75

---

site_id	AL1
Number of Residues	3
Details	binding site for residue ZN K 101

Chain	Residue
J	HIS192
J	HOH534
K	ASP98

---

site_id	AL2
Number of Residues	4
Details	binding site for residue ZN K 102

Chain	Residue
K	HIS51
K	EDO108
K	HOH234
K	HOH238

---

site_id	AL3
Number of Residues	5
Details	binding site for residue EDO K 103

Chain	Residue
J	MET98
K	SER57
K	LYS58
K	TRP60
K	HOH214

---

site_id	AL4
Number of Residues	8
Details	binding site for residue EDO K 104

Chain	Residue
J	ARG234
J	GLN242
K	TYR10
K	SER11
K	HIS13
K	PRO14
K	MET99
K	HOH221

---

site_id	AL5
Number of Residues	3
Details	binding site for residue EDO K 105

Chain	Residue
J	ARG21
K	SER33
K	ASP34

---

site_id	AL6
Number of Residues	5
Details	binding site for residue EDO K 106

Chain	Residue
K	GLU36
K	ASP38
K	ARG81
K	ASN83
K	PRO90

---

site_id	AL7
Number of Residues	6
Details	binding site for residue EDO K 107

Chain	Residue
J	ARG202
J	TRP204
J	EDO306
K	ASP96
K	ASP98
K	MET99

---

site_id	AL8
Number of Residues	2
Details	binding site for residue EDO K 108

Chain	Residue
K	HIS51
K	ZN102

---

site_id	AL9
Number of Residues	14
Details	binding site for Di-peptide MYR F 101 and GLY F 2

Chain	Residue
D	GLN63
D	ARG66
D	VAL67
D	ASP69
D	ALA70
D	THR73
D	PHE74
D	TYR114
D	TRP156
D	TYR159
D	EDO306
D	HOH410
F	GLY3
F	ALA4

---

site_id	AM1
Number of Residues	6
Details	binding site for Di-peptide MYR I 101 and GLY I 2

Chain	Residue
G	ASP69
G	THR73
G	GLN155
G	TRP156
I	GLY3
I	ALA4

---

site_id	AM2
Number of Residues	4
Details	binding site for Di-peptide MYR L 101 and GLY L 2

Chain	Residue
J	ASP69
J	THR73
L	GLY3
L	ALA4

---

Functional Information from PROSITE/UniProt

site_id	PS00290
Number of Residues	7
Details	IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YACRVNH

Chain	Residue	Details
B	TYR78-HIS84
A	TYR257-HIS263

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI3
Number of Residues	356
Details	Domain: {"description":"Ig-like C1-type"}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	Lipidation: {"description":"N-myristoyl glycine; by host","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---