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4YYV

Ficin isoform C crystal form II

Functional Information from GO Data
ChainGOidnamespacecontents
A0004197molecular_functioncysteine-type endopeptidase activity
A0005615cellular_componentextracellular space
A0005764cellular_componentlysosome
A0006508biological_processproteolysis
A0008234molecular_functioncysteine-type peptidase activity
A0051603biological_processproteolysis involved in protein catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue SO4 A 301
ChainResidue
ASCH25
ATRP26
AGLY67
AGLY68
AHIS162
AALA163
AHOH471
AHOH521
AHOH522

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 302
ChainResidue
ASER112
AGLU114
AGLY141
AARG142
AHOH468
AHOH476

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 303
ChainResidue
AGLY150
AGLU172
AGLU190
ALYS195

site_idAC4
Number of Residues9
Detailsbinding site for residue SO4 A 304
ChainResidue
AILE16
AARG17
AASN18
AASN18
AGLY185
AGLY185
ATHR186
ATHR186
AHOH446

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 305
ChainResidue
ATRP69
AGLN105
AHOH448
AHOH487

site_idAC6
Number of Residues8
Detailsbinding site for residue 16P A 306
ChainResidue
AASN18
AASN18
AGLY20
AGLY20
AARG21
AARG21
ATYR91
ATRP184

site_idAC7
Number of Residues19
Detailsbinding site for Ligand residues SCH A 25 through TRP A 26 bound to SER A 24
ChainResidue
AGLN19
AGLY23
ASER24
AALA27
APHE28
ASER29
AVAL30
ALEU53
ASER59
AGLY64
AGLY67
AGLY68
AHIS162
AALA163
AVAL164
AASN182
ASER183
ATRP184
ASO4301

Functional Information from PROSITE/UniProt
site_idPS00139
Number of Residues12
DetailsTHIOL_PROTEASE_CYS Eukaryotic thiol (cysteine) proteases cysteine active site. QGrCGSCWAfSV
ChainResidueDetails
AGLN19-VAL30

site_idPS00639
Number of Residues11
DetailsTHIOL_PROTEASE_HIS Eukaryotic thiol (cysteine) proteases histidine active site. LDHAVVAIGYG
ChainResidueDetails
ALEU160-GLY170

site_idPS00640
Number of Residues20
DetailsTHIOL_PROTEASE_ASN Eukaryotic thiol (cysteine) proteases asparagine active site. YWLvRNSWgtnWGerGYIkL
ChainResidueDetails
ATYR177-LEU196

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PDB entries from 2024-09-11

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