Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YT9

Crystal structure of Porphyromonas gingivalis peptidylarginine deiminase (PPAD) substrate-unbound.

Functional Information from GO Data
ChainGOidnamespacecontents
A0004668molecular_functionprotein-arginine deiminase activity
A0009446biological_processputrescine biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NA A 501
ChainResidue
AASP147
APHE148
AASP158
AHOH818
AHOH860

site_idAC2
Number of Residues11
Detailsbinding site for residue GOL A 502
ChainResidue
AVAL226
AGLN227
APRO328
APRO455
AASP456
AHOH614
AHOH618
AHIS196
ATYR199
AGLN207
AVAL225

site_idAC3
Number of Residues9
Detailsbinding site for residue GOL A 503
ChainResidue
AVAL226
AGLN227
AASP266
APRO455
AHOH605
AHOH620
AHOH641
AHOH643
AHOH853

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL A 504
ChainResidue
AILE149
ALYS176
AASN202
ASER204
AHOH819
AHOH857
AHOH863

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 505
ChainResidue
APRO54
AARG56
ATYR138
ATHR140
ATYR363
AHOH1026

site_idAC6
Number of Residues11
Detailsbinding site for residue GOL A 506
ChainResidue
ALYS248
ATRP278
APRO450
AASP456
APRO457
ALYS459
AHOH836
AHOH914
AHOH915
AHOH916
AHOH1007

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL A 507
ChainResidue
AVAL284
ATYR285
AHOH631
AHOH654
AHOH927

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL A 508
ChainResidue
AASP228
AASN235
ATRP240
AALA263
ALEU264
AMET267
AHOH788

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Amidino-cysteine intermediate => ECO:0000250
ChainResidueDetails
A4GJ351

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon