4YSH
Crystal structure of glycine oxidase from Geobacillus kaustophilus
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0006520 | biological_process | amino acid metabolic process |
A | 0009228 | biological_process | thiamine biosynthetic process |
A | 0009229 | biological_process | thiamine diphosphate biosynthetic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0043799 | molecular_function | glycine oxidase activity |
A | 0050660 | molecular_function | flavin adenine dinucleotide binding |
A | 0051289 | biological_process | protein homotetramerization |
A | 0071949 | molecular_function | FAD binding |
B | 0006520 | biological_process | amino acid metabolic process |
B | 0009228 | biological_process | thiamine biosynthetic process |
B | 0009229 | biological_process | thiamine diphosphate biosynthetic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0043799 | molecular_function | glycine oxidase activity |
B | 0050660 | molecular_function | flavin adenine dinucleotide binding |
B | 0051289 | biological_process | protein homotetramerization |
B | 0071949 | molecular_function | FAD binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 35 |
Details | binding site for residue FAD A 401 |
Chain | Residue |
A | GLY11 |
A | SER43 |
A | ALA46 |
A | ALA47 |
A | GLY48 |
A | MET49 |
A | THR178 |
A | VAL180 |
A | ALA207 |
A | SER208 |
A | GLY209 |
A | GLY13 |
A | TRP211 |
A | CYS232 |
A | TYR253 |
A | ARG309 |
A | HIS334 |
A | TYR335 |
A | ARG336 |
A | ASN337 |
A | GLY338 |
A | ILE339 |
A | VAL14 |
A | LEU340 |
A | HOH501 |
A | HOH503 |
A | HOH506 |
A | HOH507 |
A | HOH518 |
A | ILE15 |
A | PHE33 |
A | GLU34 |
A | LYS35 |
A | GLY41 |
A | ALA42 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 402 |
Chain | Residue |
A | ALA266 |
A | THR267 |
A | SER268 |
A | ARG288 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue GLY B 401 |
Chain | Residue |
B | GLY251 |
B | TYR253 |
B | ALA266 |
B | ARG336 |
B | GLY402 |
B | HOH529 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue GLY B 402 |
Chain | Residue |
B | GLU55 |
B | TYR253 |
B | ARG309 |
B | ARG336 |
B | GLY401 |
B | FAD403 |
site_id | AC5 |
Number of Residues | 36 |
Details | binding site for residue FAD B 403 |
Chain | Residue |
B | VAL10 |
B | GLY11 |
B | GLY13 |
B | VAL14 |
B | ILE15 |
B | PHE33 |
B | GLU34 |
B | LYS35 |
B | GLY41 |
B | ALA42 |
B | SER43 |
B | ALA46 |
B | ALA47 |
B | GLY48 |
B | MET49 |
B | THR178 |
B | GLU179 |
B | VAL180 |
B | SER208 |
B | TRP211 |
B | CYS232 |
B | TYR253 |
B | ARG309 |
B | HIS334 |
B | TYR335 |
B | ARG336 |
B | ASN337 |
B | GLY338 |
B | ILE339 |
B | LEU340 |
B | GLY402 |
B | HOH510 |
B | HOH518 |
B | HOH537 |
B | HOH545 |
B | HOH550 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue IPA B 405 |
Chain | Residue |
B | ALA18 |
B | GLU22 |
B | LYS25 |
B | PRO343 |
site_id | AC7 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 406 |
Chain | Residue |
B | ARG218 |
B | ARG218 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 407 |
Chain | Residue |
B | THR267 |
B | SER268 |
B | ARG288 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000269|Ref.3 |
Chain | Residue | Details |
A | VAL14 | |
B | GLU34 | |
B | ALA42 | |
B | ALA47 | |
B | PHE181 | |
B | PRO310 | |
B | TYR335 | |
B | ASN337 | |
A | GLU34 | |
A | ALA42 | |
A | ALA47 | |
A | PHE181 | |
A | PRO310 | |
A | TYR335 | |
A | ASN337 | |
B | VAL14 |