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4YQK

Crystal structure of TrmD, a M1G37 tRNA Methyltransferase with SAM-competitive compounds

Functional Information from GO Data
ChainGOidnamespacecontents
A0002939biological_processtRNA N1-guanine methylation
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0016740molecular_functiontransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue 4GS A 301
ChainResidue
ALEU87
ALEU138
APRO144
AHOH437
AHOH533
ASER88
APRO89
ATYR115
ASER132
AILE133
AGLY134
ATYR136
AVAL137

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 332
ChainResidueDetails
APRO89increase nucleophilicity, steric role
AGLU116electrostatic stabiliser, hydrogen bond acceptor
AARG154activator, electrostatic stabiliser, hydrogen bond donor

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PDB entries from 2025-07-09

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