4Y90
Crystal structure of Triosephosphate Isomerase from Deinococcus radiodurans
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004807 | molecular_function | triose-phosphate isomerase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006094 | biological_process | gluconeogenesis |
A | 0006096 | biological_process | glycolytic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0019563 | biological_process | glycerol catabolic process |
A | 0046166 | biological_process | glyceraldehyde-3-phosphate biosynthetic process |
B | 0004807 | molecular_function | triose-phosphate isomerase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006094 | biological_process | gluconeogenesis |
B | 0006096 | biological_process | glycolytic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0019563 | biological_process | glycerol catabolic process |
B | 0046166 | biological_process | glyceraldehyde-3-phosphate biosynthetic process |
C | 0004807 | molecular_function | triose-phosphate isomerase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006094 | biological_process | gluconeogenesis |
C | 0006096 | biological_process | glycolytic process |
C | 0016853 | molecular_function | isomerase activity |
C | 0019563 | biological_process | glycerol catabolic process |
C | 0046166 | biological_process | glyceraldehyde-3-phosphate biosynthetic process |
D | 0004807 | molecular_function | triose-phosphate isomerase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006094 | biological_process | gluconeogenesis |
D | 0006096 | biological_process | glycolytic process |
D | 0016853 | molecular_function | isomerase activity |
D | 0019563 | biological_process | glycerol catabolic process |
D | 0046166 | biological_process | glyceraldehyde-3-phosphate biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | binding site for residue SO4 A 301 |
Chain | Residue |
A | ILE169 |
A | GLY170 |
A | SER209 |
A | GLY230 |
A | GLY231 |
A | HOH470 |
A | HOH491 |
A | HOH493 |
A | HOH526 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue GOL A 302 |
Chain | Residue |
A | HIS70 |
A | GLU71 |
A | SER72 |
A | GLN116 |
C | HOH403 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue GOL A 303 |
Chain | Residue |
A | GLU182 |
A | HOH409 |
A | HOH414 |
B | GLU71 |
B | GLN116 |
B | HOH445 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue GOL A 304 |
Chain | Residue |
A | HOH402 |
A | HOH404 |
B | GLU193 |
B | GLN194 |
B | ARG198 |
B | GOL305 |
B | HOH432 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue CA A 305 |
Chain | Residue |
A | ASN11 |
A | LYS13 |
A | HIS96 |
A | GLU164 |
A | HOH523 |
site_id | AC6 |
Number of Residues | 10 |
Details | binding site for residue SO4 B 301 |
Chain | Residue |
B | ALA168 |
B | ILE169 |
B | GLY170 |
B | SER209 |
B | GLY230 |
B | GLY231 |
B | HOH464 |
B | HOH496 |
B | HOH507 |
B | HOH583 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue SO4 B 302 |
Chain | Residue |
A | HOH409 |
A | HOH420 |
B | HIS70 |
B | GLU71 |
B | SER72 |
B | HOH542 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue GOL B 303 |
Chain | Residue |
A | GLY77 |
B | ASP66 |
B | GLU78 |
B | ILE79 |
B | HOH456 |
B | HOH597 |
site_id | AC9 |
Number of Residues | 9 |
Details | binding site for residue GOL B 304 |
Chain | Residue |
B | PRO34 |
B | ALA35 |
B | GLU36 |
B | ARG247 |
B | HOH417 |
B | HOH426 |
D | THR30 |
D | LYS31 |
D | TYR32 |
site_id | AD1 |
Number of Residues | 5 |
Details | binding site for residue GOL B 305 |
Chain | Residue |
A | GOL304 |
B | TYR195 |
B | GLY196 |
B | ALA197 |
B | ARG198 |
site_id | AD2 |
Number of Residues | 4 |
Details | binding site for residue CA B 306 |
Chain | Residue |
B | ASN11 |
B | HIS96 |
B | GLU164 |
B | HOH514 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue CA B 307 |
Chain | Residue |
B | CYS219 |
B | LYS221 |
B | VAL224 |
B | HOH601 |
site_id | AD4 |
Number of Residues | 9 |
Details | binding site for residue SO4 C 301 |
Chain | Residue |
C | GLY170 |
C | SER209 |
C | GLY230 |
C | GLY231 |
C | HOH494 |
C | HOH497 |
C | HOH500 |
C | HOH518 |
C | HOH529 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue GOL C 302 |
Chain | Residue |
C | ASP66 |
C | GLU78 |
C | ILE79 |
C | CA306 |
C | HOH447 |
D | GLY77 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue GOL C 303 |
Chain | Residue |
B | ARG135 |
C | HIS70 |
C | GLU71 |
C | SER72 |
C | HOH413 |
C | HOH547 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue NA C 304 |
Chain | Residue |
C | GLU164 |
C | HOH497 |
C | ASN11 |
C | HIS96 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue NA C 305 |
Chain | Residue |
C | CYS219 |
C | LYS221 |
C | VAL224 |
C | HOH577 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue CA C 306 |
Chain | Residue |
C | ASP66 |
C | LYS113 |
C | GOL302 |
D | HIS103 |
site_id | AE1 |
Number of Residues | 11 |
Details | binding site for residue SO4 D 301 |
Chain | Residue |
D | LYS13 |
D | ALA168 |
D | GLY170 |
D | SER209 |
D | GLY230 |
D | GLY231 |
D | CA304 |
D | HOH518 |
D | HOH520 |
D | HOH531 |
D | HOH588 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue GOL D 302 |
Chain | Residue |
D | HIS70 |
D | GLU71 |
D | HIS140 |
D | HOH426 |
D | HOH576 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue NA D 303 |
Chain | Residue |
D | ASN11 |
D | HIS96 |
D | GLU164 |
site_id | AE4 |
Number of Residues | 7 |
Details | binding site for residue CA D 304 |
Chain | Residue |
D | GLY208 |
D | SER209 |
D | VAL210 |
D | LEU228 |
D | VAL229 |
D | GLY230 |
D | SO4301 |
Functional Information from PROSITE/UniProt
site_id | PS00171 |
Number of Residues | 11 |
Details | TIM_1 Triosephosphate isomerase active site. AYEPVWAIGTG |
Chain | Residue | Details |
A | ALA162-GLY172 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | ACT_SITE: Electrophile => ECO:0000255|HAMAP-Rule:MF_00147 |
Chain | Residue | Details |
A | HIS96 | |
B | HIS96 | |
C | HIS96 | |
D | HIS96 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_00147 |
Chain | Residue | Details |
A | GLU164 | |
B | GLU164 | |
C | GLU164 | |
D | GLU164 |
site_id | SWS_FT_FI3 |
Number of Residues | 16 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00147 |
Chain | Residue | Details |
A | ASN11 | |
C | GLY170 | |
C | SER209 | |
C | GLY230 | |
D | ASN11 | |
D | GLY170 | |
D | SER209 | |
D | GLY230 | |
A | GLY170 | |
A | SER209 | |
A | GLY230 | |
B | ASN11 | |
B | GLY170 | |
B | SER209 | |
B | GLY230 | |
C | ASN11 |