Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4Y5Z

T=1 capsid structure of SeMV Ndel65CP fused with B-domain of S. aureus protein SpA at the N-terminus (P1 crystal form)

Functional Information from GO Data

Chain	GOid	namespace	contents
0	0005198	molecular_function	structural molecule activity
0	0019028	cellular_component	viral capsid
0	0019865	molecular_function	immunoglobulin binding
1	0005198	molecular_function	structural molecule activity
1	0019028	cellular_component	viral capsid
1	0019865	molecular_function	immunoglobulin binding
2	0005198	molecular_function	structural molecule activity
2	0019028	cellular_component	viral capsid
2	0019865	molecular_function	immunoglobulin binding
3	0005198	molecular_function	structural molecule activity
3	0019028	cellular_component	viral capsid
3	0019865	molecular_function	immunoglobulin binding
4	0005198	molecular_function	structural molecule activity
4	0019028	cellular_component	viral capsid
4	0019865	molecular_function	immunoglobulin binding
5	0005198	molecular_function	structural molecule activity
5	0019028	cellular_component	viral capsid
5	0019865	molecular_function	immunoglobulin binding
6	0005198	molecular_function	structural molecule activity
6	0019028	cellular_component	viral capsid
6	0019865	molecular_function	immunoglobulin binding
7	0005198	molecular_function	structural molecule activity
7	0019028	cellular_component	viral capsid
7	0019865	molecular_function	immunoglobulin binding
a	0005198	molecular_function	structural molecule activity
a	0019028	cellular_component	viral capsid
a	0019865	molecular_function	immunoglobulin binding
A	0005198	molecular_function	structural molecule activity
A	0019028	cellular_component	viral capsid
A	0019865	molecular_function	immunoglobulin binding
b	0005198	molecular_function	structural molecule activity
b	0019028	cellular_component	viral capsid
b	0019865	molecular_function	immunoglobulin binding
B	0005198	molecular_function	structural molecule activity
B	0019028	cellular_component	viral capsid
B	0019865	molecular_function	immunoglobulin binding
c	0005198	molecular_function	structural molecule activity
c	0019028	cellular_component	viral capsid
c	0019865	molecular_function	immunoglobulin binding
C	0005198	molecular_function	structural molecule activity
C	0019028	cellular_component	viral capsid
C	0019865	molecular_function	immunoglobulin binding
d	0005198	molecular_function	structural molecule activity
d	0019028	cellular_component	viral capsid
d	0019865	molecular_function	immunoglobulin binding
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
D	0019865	molecular_function	immunoglobulin binding
e	0005198	molecular_function	structural molecule activity
e	0019028	cellular_component	viral capsid
e	0019865	molecular_function	immunoglobulin binding
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid
E	0019865	molecular_function	immunoglobulin binding
f	0005198	molecular_function	structural molecule activity
f	0019028	cellular_component	viral capsid
f	0019865	molecular_function	immunoglobulin binding
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
F	0019865	molecular_function	immunoglobulin binding
g	0005198	molecular_function	structural molecule activity
g	0019028	cellular_component	viral capsid
g	0019865	molecular_function	immunoglobulin binding
G	0005198	molecular_function	structural molecule activity
G	0019028	cellular_component	viral capsid
G	0019865	molecular_function	immunoglobulin binding
h	0005198	molecular_function	structural molecule activity
h	0019028	cellular_component	viral capsid
h	0019865	molecular_function	immunoglobulin binding
H	0005198	molecular_function	structural molecule activity
H	0019028	cellular_component	viral capsid
H	0019865	molecular_function	immunoglobulin binding
i	0005198	molecular_function	structural molecule activity
i	0019028	cellular_component	viral capsid
i	0019865	molecular_function	immunoglobulin binding
I	0005198	molecular_function	structural molecule activity
I	0019028	cellular_component	viral capsid
I	0019865	molecular_function	immunoglobulin binding
j	0005198	molecular_function	structural molecule activity
j	0019028	cellular_component	viral capsid
j	0019865	molecular_function	immunoglobulin binding
J	0005198	molecular_function	structural molecule activity
J	0019028	cellular_component	viral capsid
J	0019865	molecular_function	immunoglobulin binding
k	0005198	molecular_function	structural molecule activity
k	0019028	cellular_component	viral capsid
k	0019865	molecular_function	immunoglobulin binding
K	0005198	molecular_function	structural molecule activity
K	0019028	cellular_component	viral capsid
K	0019865	molecular_function	immunoglobulin binding
l	0005198	molecular_function	structural molecule activity
l	0019028	cellular_component	viral capsid
l	0019865	molecular_function	immunoglobulin binding
L	0005198	molecular_function	structural molecule activity
L	0019028	cellular_component	viral capsid
L	0019865	molecular_function	immunoglobulin binding
m	0005198	molecular_function	structural molecule activity
m	0019028	cellular_component	viral capsid
m	0019865	molecular_function	immunoglobulin binding
M	0005198	molecular_function	structural molecule activity
M	0019028	cellular_component	viral capsid
M	0019865	molecular_function	immunoglobulin binding
n	0005198	molecular_function	structural molecule activity
n	0019028	cellular_component	viral capsid
n	0019865	molecular_function	immunoglobulin binding
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
N	0019865	molecular_function	immunoglobulin binding
o	0005198	molecular_function	structural molecule activity
o	0019028	cellular_component	viral capsid
o	0019865	molecular_function	immunoglobulin binding
O	0005198	molecular_function	structural molecule activity
O	0019028	cellular_component	viral capsid
O	0019865	molecular_function	immunoglobulin binding
p	0005198	molecular_function	structural molecule activity
p	0019028	cellular_component	viral capsid
p	0019865	molecular_function	immunoglobulin binding
P	0005198	molecular_function	structural molecule activity
P	0019028	cellular_component	viral capsid
P	0019865	molecular_function	immunoglobulin binding
q	0005198	molecular_function	structural molecule activity
q	0019028	cellular_component	viral capsid
q	0019865	molecular_function	immunoglobulin binding
Q	0005198	molecular_function	structural molecule activity
Q	0019028	cellular_component	viral capsid
Q	0019865	molecular_function	immunoglobulin binding
r	0005198	molecular_function	structural molecule activity
r	0019028	cellular_component	viral capsid
r	0019865	molecular_function	immunoglobulin binding
R	0005198	molecular_function	structural molecule activity
R	0019028	cellular_component	viral capsid
R	0019865	molecular_function	immunoglobulin binding
s	0005198	molecular_function	structural molecule activity
s	0019028	cellular_component	viral capsid
s	0019865	molecular_function	immunoglobulin binding
S	0005198	molecular_function	structural molecule activity
S	0019028	cellular_component	viral capsid
S	0019865	molecular_function	immunoglobulin binding
t	0005198	molecular_function	structural molecule activity
t	0019028	cellular_component	viral capsid
t	0019865	molecular_function	immunoglobulin binding
T	0005198	molecular_function	structural molecule activity
T	0019028	cellular_component	viral capsid
T	0019865	molecular_function	immunoglobulin binding
u	0005198	molecular_function	structural molecule activity
u	0019028	cellular_component	viral capsid
u	0019865	molecular_function	immunoglobulin binding
U	0005198	molecular_function	structural molecule activity
U	0019028	cellular_component	viral capsid
U	0019865	molecular_function	immunoglobulin binding
v	0005198	molecular_function	structural molecule activity
v	0019028	cellular_component	viral capsid
v	0019865	molecular_function	immunoglobulin binding
V	0005198	molecular_function	structural molecule activity
V	0019028	cellular_component	viral capsid
V	0019865	molecular_function	immunoglobulin binding
w	0005198	molecular_function	structural molecule activity
w	0019028	cellular_component	viral capsid
w	0019865	molecular_function	immunoglobulin binding
W	0005198	molecular_function	structural molecule activity
W	0019028	cellular_component	viral capsid
W	0019865	molecular_function	immunoglobulin binding
x	0005198	molecular_function	structural molecule activity
x	0019028	cellular_component	viral capsid
x	0019865	molecular_function	immunoglobulin binding
X	0005198	molecular_function	structural molecule activity
X	0019028	cellular_component	viral capsid
X	0019865	molecular_function	immunoglobulin binding
y	0005198	molecular_function	structural molecule activity
y	0019028	cellular_component	viral capsid
y	0019865	molecular_function	immunoglobulin binding
Y	0005198	molecular_function	structural molecule activity
Y	0019028	cellular_component	viral capsid
Y	0019865	molecular_function	immunoglobulin binding
z	0005198	molecular_function	structural molecule activity
z	0019028	cellular_component	viral capsid
z	0019865	molecular_function	immunoglobulin binding
Z	0005198	molecular_function	structural molecule activity
Z	0019028	cellular_component	viral capsid
Z	0019865	molecular_function	immunoglobulin binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	binding site for residue SO4 A 301

Chain	Residue
A	SER133
A	SER134
B	SER133
B	SER134
C	SER133
D	SER133
D	SER134
E	SER133
E	SER134

site_id	AC2
Number of Residues	9
Details	binding site for residue SO4 H 301

Chain	Residue
F	SER133
G	SER133
G	SER134
H	SER133
H	SER134
I	SER133
I	SER134
J	SER133
J	SER134

site_id	AC3
Number of Residues	8
Details	binding site for residue SO4 M 301

Chain	Residue
K	SER133
L	SER133
M	SER133
M	SER134
N	SER133
N	SER134
O	SER133
O	SER134

site_id	AC4
Number of Residues	9
Details	binding site for residue SO4 P 301

Chain	Residue
P	SER133
P	SER134
Q	SER133
Q	SER134
R	SER133
S	SER133
S	SER134
T	SER133
T	SER134

site_id	AC5
Number of Residues	10
Details	binding site for residue SO4 X 301

Chain	Residue
U	SER133
U	SER134
V	SER133
V	SER134
W	SER133
W	SER134
X	SER133
X	SER134
Y	SER133
Y	SER134

site_id	AC6
Number of Residues	10
Details	binding site for residue SO4 Z 301

Chain	Residue
Z	SER133
Z	SER134
a	SER133
a	SER134
c	SER133
c	SER134
e	SER133
e	SER134
g	SER133
g	SER134

site_id	AC7
Number of Residues	9
Details	binding site for residue SO4 o 301

Chain	Residue
i	SER133
i	SER134
k	SER133
k	SER134
m	SER133
m	SER134
o	SER133
o	SER134
q	SER133

site_id	AC8
Number of Residues	10
Details	binding site for residue SO4 s 301

Chain	Residue
r	SER133
r	SER134
s	SER133
s	SER134
t	SER133
t	SER134
u	SER133
u	SER134
v	SER133
v	SER134

site_id	AC9
Number of Residues	10
Details	binding site for residue SO4 w 301

Chain	Residue
0	SER133
0	SER134
w	SER133
w	SER134
x	SER133
x	SER134
y	SER133
y	SER134
z	SER133
z	SER134

site_id	AD1
Number of Residues	10
Details	binding site for residue SO4 4 301

Chain	Residue
1	SER133
1	SER134
2	SER133
2	SER134
3	SER133
3	SER134
4	SER133
4	SER134
5	SER133
5	SER134

site_id	AD2
Number of Residues	10
Details	binding site for residue SO4 7 301

Chain	Residue
b	SER134
d	SER133
d	SER134
f	SER133
f	SER134
6	SER133
6	SER134
7	SER133
7	SER134
b	SER133

site_id	AD3
Number of Residues	10
Details	binding site for residue SO4 h 301

Chain	Residue
h	SER133
h	SER134
j	SER133
j	SER134
l	SER133
l	SER134
n	SER133
n	SER134
p	SER133
p	SER134

Functional Information from PROSITE/UniProt

site_id	PS00555
Number of Residues	26
Details	ICOSAH_VIR_COAT_S Plant viruses icosahedral capsid proteins 'S' region signature. YiPscpsstaGsIhMgFqyDmadtvP

Chain	Residue	Details
A	TYR127-PRO152

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)