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4Y1D

Cyclic hexapeptide cyc[NdPopPKID] in complex with HIV-1 integrase core domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0015074biological_processDNA integration
B0003676molecular_functionnucleic acid binding
B0015074biological_processDNA integration
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue CD A 1001
ChainResidue
ACYS65
AHIS67
AGLU92
ACD1002

site_idAC2
Number of Residues6
Detailsbinding site for residue CD A 1002
ChainResidue
AHOH1107
ACYS65
AGLU92
AASP116
ACD1001
ACL1003

site_idAC3
Number of Residues3
Detailsbinding site for residue CL A 1003
ChainResidue
AASP116
APHE121
ACD1002

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 1004
ChainResidue
ALYS71
AHIS171
ALEU172
AHOH1135
AHOH1145

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 1005
ChainResidue
ACYS65
ATHR66
AHIS67

site_idAC6
Number of Residues6
Detailsbinding site for residue CD B 301
ChainResidue
AASP131
AHOH1147
BCYS65
BHIS67
BGLU92
BCD302

site_idAC7
Number of Residues7
Detailsbinding site for residue CD B 302
ChainResidue
AASP131
BCYS65
BGLU92
BASP116
BCD301
BCL303
BHOH405

site_idAC8
Number of Residues5
Detailsbinding site for residue CL B 303
ChainResidue
BCYS65
BGLU92
BASP116
BPHE121
BCD302

site_idAC9
Number of Residues8
Detailsbinding site for residue SO4 B 304
ChainResidue
BGLU69
BLYS71
BARG166
BGLU170
BHIS171
BLEU172
BARG187
BHOH432

site_idAD1
Number of Residues4
Detailsbinding site for residue SO4 B 305
ChainResidue
ALYS136
BTHR66
BHIS67
BLYS159

site_idAD2
Number of Residues9
Detailsbinding site for Ligand residues DVA D 5 through ASP D 3 bound to ASN D 4
ChainResidue
AGLN168
AALA169
AGLU170
AHIS171
ATHR174
AHOH1109
BTHR125
DASN4
DHOH101

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP64
AASP116
BASP64
BASP116

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P04585
ChainResidueDetails
AGLU152
BGLU152

218853

PDB entries from 2024-04-24

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