4Y15
SdiA in complex with 3-oxo-C6-homoserine lactone
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| B | 0003677 | molecular_function | DNA binding |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0045893 | biological_process | positive regulation of DNA-templated transcription |
| C | 0003677 | molecular_function | DNA binding |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0045893 | biological_process | positive regulation of DNA-templated transcription |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 301 |
| Chain | Residue |
| A | ASN101 |
| A | ARG116 |
| A | ARG117 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue 482 A 302 |
| Chain | Residue |
| A | SER134 |
| A | SER43 |
| A | TYR63 |
| A | TRP67 |
| A | TYR71 |
| A | ASP80 |
| A | TRP95 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 B 301 |
| Chain | Residue |
| B | ARG111 |
| B | ARG117 |
| B | ALA140 |
| site_id | AC4 |
| Number of Residues | 9 |
| Details | binding site for residue 482 B 302 |
| Chain | Residue |
| B | SER43 |
| B | TYR63 |
| B | TRP67 |
| B | TYR71 |
| B | ASP80 |
| B | VAL82 |
| B | TRP95 |
| B | LEU106 |
| B | SER134 |
| site_id | AC5 |
| Number of Residues | 10 |
| Details | binding site for residue 482 C 301 |
| Chain | Residue |
| C | SER43 |
| C | CYS45 |
| C | PHE59 |
| C | TYR63 |
| C | TRP67 |
| C | TYR71 |
| C | ASP80 |
| C | LEU83 |
| C | TRP95 |
| C | HOH401 |
Functional Information from PROSITE/UniProt
| site_id | PS00622 |
| Number of Residues | 28 |
| Details | HTH_LUXR_1 LuxR-type HTH domain signature. GktSaeIAmiLsIsenTVnfHqkNMqkK |
| Chain | Residue | Details |
| A | GLY194-LYS221 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 57 |
| Details | DNA binding: {"description":"H-T-H motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU00411","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25827420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4Y15","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"4Y17","evidenceCode":"ECO:0000312"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25827420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4Y13","evidenceCode":"ECO:0000312"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 9 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"P07026","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25827420","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4Y15","evidenceCode":"ECO:0000312"}]} |
| Chain | Residue | Details |
