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4Y06

Crystal structure of the DAP BII (G675R) dipeptide complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0008239molecular_functiondipeptidyl-peptidase activity
A0070009molecular_functionserine-type aminopeptidase activity
B0008239molecular_functiondipeptidyl-peptidase activity
B0070009molecular_functionserine-type aminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue LEU A 801
ChainResidue
AHIS86
AASN215
ATRP216
AASN330
APHE673
AASP674
AGLU802

site_idAC2
Number of Residues11
Detailsbinding site for residue GLU A 802
ChainResidue
AILE652
ATHR653
AGLY654
AGLY655
ASER657
APHE673
AARG675
ALEU801
AHOH1021
AHIS86
ATRP216

site_idAC3
Number of Residues8
Detailsbinding site for residue GOL A 803
ChainResidue
ATYR448
AALA450
AASP453
AGLN457
ALEU495
AALA496
ATHR498
AHOH902

site_idAC4
Number of Residues2
Detailsbinding site for residue GOL A 804
ChainResidue
ALEU94
AARG447

site_idAC5
Number of Residues4
Detailsbinding site for residue GOL A 805
ChainResidue
AARG175
ATYR177
ALEU577
AHOH912

site_idAC6
Number of Residues5
Detailsbinding site for residue GOL A 806
ChainResidue
AARG413
ALEU535
AGLU539
AARG542
AHOH1004

site_idAC7
Number of Residues6
Detailsbinding site for residue GOL A 807
ChainResidue
AALA257
AARG699
AARG702
AHOH907
AHOH956
AHOH1031

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL A 808
ChainResidue
AASP593
AGLY594
AHOH929
AHOH947
AHOH980
BTHR598
BPHE600
BILE639

site_idAC9
Number of Residues4
Detailsbinding site for residue ZN A 809
ChainResidue
AGLU635
AHIS665
AHOH901
AHOH1092

site_idAD1
Number of Residues3
Detailsbinding site for residue ZN A 810
ChainResidue
AASP59
AHIS252
ATRP253

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN A 811
ChainResidue
AGLU438
BGLU505
BLYS508
BHOH1156

site_idAD3
Number of Residues7
Detailsbinding site for residue LEU B 801
ChainResidue
BHIS86
BASN215
BTRP216
BASN330
BPHE673
BASP674
BGLU802

site_idAD4
Number of Residues12
Detailsbinding site for residue GLU B 802
ChainResidue
BHIS86
BTRP216
BILE652
BTHR653
BGLY654
BGLY655
BASN656
BSER657
BPHE673
BARG675
BLEU801
BHOH972

site_idAD5
Number of Residues9
Detailsbinding site for residue GOL B 803
ChainResidue
BMET404
BTYR448
BALA450
BASP453
BGLN457
BLEU495
BALA496
BHOH952
BHOH1090

site_idAD6
Number of Residues6
Detailsbinding site for residue GOL B 804
ChainResidue
BMET217
BTRP218
BTYR589
BTYR597
BTRP677
BGLU678

site_idAD7
Number of Residues3
Detailsbinding site for residue GOL B 805
ChainResidue
BGLY90
BALA118
BARG447

site_idAD8
Number of Residues4
Detailsbinding site for residue GOL B 806
ChainResidue
BGLY406
BGLN410
BGLY440
BHOH904

site_idAD9
Number of Residues6
Detailsbinding site for residue GOL B 807
ChainResidue
ALYS592
AHOH935
BASP214
BPRO219
BLYS609
BHOH1017

site_idAE1
Number of Residues5
Detailsbinding site for residue GOL B 808
ChainResidue
BASP258
BGLY633
BLEU634
BGLU635
BHIS665

site_idAE2
Number of Residues7
Detailsbinding site for residue GOL B 809
ChainResidue
ATHR598
APHE600
AILE639
AHOH1074
BASP593
BGLY594
BHOH941

site_idAE3
Number of Residues8
Detailsbinding site for residue GOL B 810
ChainResidue
BALA257
BASP258
BGLN259
BARG699
BARG702
BHOH989
BHOH995
BHOH1056

site_idAE4
Number of Residues4
Detailsbinding site for residue ZN B 811
ChainResidue
AGLU505
ALYS508
AHOH1112
BGLU438

site_idAE5
Number of Residues5
Detailsbinding site for residue ZN B 812
ChainResidue
BLYS47
BGLU635
BHIS665
BHOH902
BHOH1141

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Charge relay system => ECO:0000305|PubMed:24598890, ECO:0000305|PubMed:24827749
ChainResidueDetails
AHIS86
AASP224
ASER657
BHIS86
BASP224
BSER657

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:24827749
ChainResidueDetails
AASN215
AASN330
AGLY655
APHE673
BASN215
BASN330
BGLY655
BPHE673

224004

PDB entries from 2024-08-21

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