4XWT
Crystal structure of RNase J complexed with UMP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003723 | molecular_function | RNA binding |
| A | 0004518 | molecular_function | nuclease activity |
| A | 0004519 | molecular_function | endonuclease activity |
| A | 0004521 | molecular_function | RNA endonuclease activity |
| A | 0004527 | molecular_function | exonuclease activity |
| A | 0004534 | molecular_function | 5'-3' RNA exonuclease activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006364 | biological_process | rRNA processing |
| A | 0006396 | biological_process | RNA processing |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0004518 | molecular_function | nuclease activity |
| B | 0004519 | molecular_function | endonuclease activity |
| B | 0004521 | molecular_function | RNA endonuclease activity |
| B | 0004527 | molecular_function | exonuclease activity |
| B | 0004534 | molecular_function | 5'-3' RNA exonuclease activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006364 | biological_process | rRNA processing |
| B | 0006396 | biological_process | RNA processing |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue ZN A 601 |
| Chain | Residue |
| A | HIS84 |
| A | HIS86 |
| A | HIS153 |
| A | ASP175 |
| A | ZN602 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue ZN A 602 |
| Chain | Residue |
| A | ZN601 |
| A | ASP88 |
| A | HIS89 |
| A | ASP175 |
| A | HIS403 |
| site_id | AC3 |
| Number of Residues | 2 |
| Details | binding site for residue MN A 603 |
| Chain | Residue |
| A | GLY59 |
| A | ASP456 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 604 |
| Chain | Residue |
| A | PRO371 |
| A | HOH764 |
| A | HOH779 |
| B | ARG407 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 605 |
| Chain | Residue |
| A | ARG407 |
| A | HOH766 |
| B | VAL354 |
| B | TYR370 |
| B | HOH733 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | binding site for residue U5P A 606 |
| Chain | Residue |
| A | SER154 |
| A | SER247 |
| A | ILE347 |
| A | SER379 |
| A | GLY380 |
| A | HIS381 |
| A | HOH795 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue ZN B 601 |
| Chain | Residue |
| B | ASP88 |
| B | HIS89 |
| B | ASP175 |
| B | HIS403 |
| B | ZN602 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue ZN B 602 |
| Chain | Residue |
| B | HIS84 |
| B | HIS86 |
| B | HIS153 |
| B | ASP175 |
| B | ZN601 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue MN B 603 |
| Chain | Residue |
| B | GLY59 |
| B | ASP456 |
| site_id | AD1 |
| Number of Residues | 10 |
| Details | binding site for residue U5P B 604 |
| Chain | Residue |
| B | HIS153 |
| B | SER154 |
| B | THR211 |
| B | ASN212 |
| B | ARG215 |
| B | SER379 |
| B | GLY380 |
| B | HIS381 |
| B | HOH753 |
| B | HOH793 |
