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4XJ9

Crystal structure of the NanB sialidase from streptococcus pneumoniae in complex with Optactin at pH 5.0 in 50mM Sodium Acetate with DMSO as the cryoprotectant

Functional Information from GO Data
ChainGOidnamespacecontents
A0004308molecular_functionexo-alpha-sialidase activity
A0005737cellular_componentcytoplasm
A0005975biological_processcarbohydrate metabolic process
A0006689biological_processganglioside catabolic process
A0009313biological_processoligosaccharide catabolic process
A0016020cellular_componentmembrane
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue OPX A 701
ChainResidue
ATYR250
AHOH937
AHOH940
AHOH901
AHOH1140
ATHR251
AGLN494
ALYS499
AILE596
ATHR657
AGLU658
AHOH982
AHOH919

site_idAC2
Number of Residues7
Detailsbinding site for residue DMS A 702
ChainResidue
AARG245
AILE246
AARG264
AASP270
AILE326
AASP327
ATYR653

site_idAC3
Number of Residues4
Detailsbinding site for residue DMS A 703
ChainResidue
AARG129
AGLU165
AVAL166
ASER682

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues11
DetailsRepeat: {"description":"BNR 1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues11
DetailsRepeat: {"description":"BNR 2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues11
DetailsRepeat: {"description":"BNR 3"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues11
DetailsRepeat: {"description":"BNR 4"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues3
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

243083

PDB entries from 2025-10-15

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