4XGI
Crystal structure of Glutamate dehydrogenase from Burkholderia thailandensis
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0004352 | molecular_function | glutamate dehydrogenase (NAD+) activity |
A | 0004353 | molecular_function | glutamate dehydrogenase [NAD(P)+] activity |
A | 0006520 | biological_process | amino acid metabolic process |
A | 0006538 | biological_process | glutamate catabolic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016639 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
B | 0000166 | molecular_function | nucleotide binding |
B | 0004352 | molecular_function | glutamate dehydrogenase (NAD+) activity |
B | 0004353 | molecular_function | glutamate dehydrogenase [NAD(P)+] activity |
B | 0006520 | biological_process | amino acid metabolic process |
B | 0006538 | biological_process | glutamate catabolic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016639 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
C | 0000166 | molecular_function | nucleotide binding |
C | 0004352 | molecular_function | glutamate dehydrogenase (NAD+) activity |
C | 0004353 | molecular_function | glutamate dehydrogenase [NAD(P)+] activity |
C | 0006520 | biological_process | amino acid metabolic process |
C | 0006538 | biological_process | glutamate catabolic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016639 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
D | 0000166 | molecular_function | nucleotide binding |
D | 0004352 | molecular_function | glutamate dehydrogenase (NAD+) activity |
D | 0004353 | molecular_function | glutamate dehydrogenase [NAD(P)+] activity |
D | 0006520 | biological_process | amino acid metabolic process |
D | 0006538 | biological_process | glutamate catabolic process |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016639 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
E | 0000166 | molecular_function | nucleotide binding |
E | 0004352 | molecular_function | glutamate dehydrogenase (NAD+) activity |
E | 0004353 | molecular_function | glutamate dehydrogenase [NAD(P)+] activity |
E | 0006520 | biological_process | amino acid metabolic process |
E | 0006538 | biological_process | glutamate catabolic process |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016639 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
F | 0000166 | molecular_function | nucleotide binding |
F | 0004352 | molecular_function | glutamate dehydrogenase (NAD+) activity |
F | 0004353 | molecular_function | glutamate dehydrogenase [NAD(P)+] activity |
F | 0006520 | biological_process | amino acid metabolic process |
F | 0006538 | biological_process | glutamate catabolic process |
F | 0016491 | molecular_function | oxidoreductase activity |
F | 0016639 | molecular_function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 29 |
Details | binding site for residue NAD A 500 |
Chain | Residue |
A | ARG92 |
A | GLY238 |
A | ASN239 |
A | VAL240 |
A | ASP260 |
A | HIS261 |
A | ALA311 |
A | ALA312 |
A | GLY333 |
A | ALA334 |
A | ASN335 |
A | ASP164 |
A | ASN360 |
A | AKG501 |
A | HOH639 |
A | HOH661 |
A | HOH688 |
A | HOH691 |
A | HOH703 |
A | HOH756 |
A | HOH779 |
A | HOH849 |
A | VAL165 |
A | ASN166 |
A | ARG204 |
A | THR208 |
A | GLN235 |
A | GLY236 |
A | PHE237 |
site_id | AC2 |
Number of Residues | 11 |
Details | binding site for residue AKG A 501 |
Chain | Residue |
A | LYS88 |
A | GLY90 |
A | MET109 |
A | LYS112 |
A | LYS124 |
A | ALA162 |
A | ARG204 |
A | ASN335 |
A | SER367 |
A | NAD500 |
A | HOH843 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue EDO A 502 |
Chain | Residue |
A | VAL409 |
site_id | AC4 |
Number of Residues | 32 |
Details | binding site for residue NAD B 500 |
Chain | Residue |
B | ARG92 |
B | ASP164 |
B | VAL165 |
B | ASN166 |
B | ARG204 |
B | THR208 |
B | GLN235 |
B | GLY236 |
B | PHE237 |
B | GLY238 |
B | ASN239 |
B | VAL240 |
B | ASP260 |
B | HIS261 |
B | ALA311 |
B | ALA312 |
B | LEU313 |
B | GLY333 |
B | ALA334 |
B | ASN335 |
B | ASN360 |
B | AKG501 |
B | HOH640 |
B | HOH648 |
B | HOH671 |
B | HOH682 |
B | HOH721 |
B | HOH723 |
B | HOH768 |
B | HOH774 |
B | HOH864 |
B | HOH881 |
site_id | AC5 |
Number of Residues | 13 |
Details | binding site for residue AKG B 501 |
Chain | Residue |
B | LYS88 |
B | GLY90 |
B | MET109 |
B | LYS112 |
B | LYS124 |
B | ALA162 |
B | ARG204 |
B | ASN335 |
B | GLY363 |
B | VAL364 |
B | SER367 |
B | NAD500 |
B | HOH655 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue EDO B 502 |
Chain | Residue |
B | TRP401 |
B | ALA404 |
B | VAL409 |
B | HOH882 |
site_id | AC7 |
Number of Residues | 31 |
Details | binding site for residue NAD C 500 |
Chain | Residue |
C | GLY238 |
C | ASN239 |
C | VAL240 |
C | ASP260 |
C | HIS261 |
C | ALA311 |
C | ALA312 |
C | GLY333 |
C | ALA334 |
C | ASN335 |
C | ASN360 |
C | AKG501 |
C | HOH609 |
C | HOH629 |
C | HOH658 |
C | HOH661 |
C | HOH675 |
C | HOH683 |
C | HOH759 |
C | HOH763 |
C | HOH774 |
C | HOH783 |
C | ARG92 |
C | ASP164 |
C | VAL165 |
C | ASN166 |
C | ARG204 |
C | THR208 |
C | GLN235 |
C | GLY236 |
C | PHE237 |
site_id | AC8 |
Number of Residues | 13 |
Details | binding site for residue AKG C 501 |
Chain | Residue |
C | LYS88 |
C | GLY89 |
C | GLY90 |
C | MET109 |
C | LYS112 |
C | LYS124 |
C | ALA162 |
C | ARG204 |
C | ASN335 |
C | VAL364 |
C | SER367 |
C | NAD500 |
C | HOH796 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue EDO C 502 |
Chain | Residue |
C | ALA404 |
C | GLU405 |
C | VAL409 |
site_id | AD1 |
Number of Residues | 30 |
Details | binding site for residue NAD D 500 |
Chain | Residue |
D | ARG92 |
D | ASP164 |
D | VAL165 |
D | ASN166 |
D | ARG204 |
D | THR208 |
D | GLY236 |
D | PHE237 |
D | GLY238 |
D | ASN239 |
D | VAL240 |
D | ASP260 |
D | HIS261 |
D | ALA311 |
D | ALA312 |
D | GLY333 |
D | ALA334 |
D | ASN335 |
D | ASN360 |
D | AKG501 |
D | HOH651 |
D | HOH659 |
D | HOH665 |
D | HOH679 |
D | HOH695 |
D | HOH750 |
D | HOH777 |
D | HOH811 |
D | HOH889 |
D | HOH900 |
site_id | AD2 |
Number of Residues | 16 |
Details | binding site for residue AKG D 501 |
Chain | Residue |
D | LYS88 |
D | GLY89 |
D | GLY90 |
D | MET109 |
D | LYS112 |
D | LYS124 |
D | ALA162 |
D | PRO163 |
D | ASP164 |
D | ARG204 |
D | ASN335 |
D | GLY363 |
D | VAL364 |
D | SER367 |
D | NAD500 |
D | HOH890 |
site_id | AD3 |
Number of Residues | 4 |
Details | binding site for residue EDO D 502 |
Chain | Residue |
D | ALA404 |
D | GLU405 |
D | VAL409 |
D | HOH867 |
site_id | AD4 |
Number of Residues | 31 |
Details | binding site for residue NAD E 500 |
Chain | Residue |
E | ARG92 |
E | ASP164 |
E | VAL165 |
E | ASN166 |
E | ARG204 |
E | THR208 |
E | GLN235 |
E | GLY236 |
E | PHE237 |
E | GLY238 |
E | ASN239 |
E | VAL240 |
E | ASP260 |
E | HIS261 |
E | ALA311 |
E | ALA312 |
E | GLY333 |
E | ALA334 |
E | ASN335 |
E | ASN360 |
E | AKG501 |
E | HOH607 |
E | HOH633 |
E | HOH634 |
E | HOH645 |
E | HOH651 |
E | HOH658 |
E | HOH724 |
E | HOH754 |
E | HOH759 |
E | HOH826 |
site_id | AD5 |
Number of Residues | 14 |
Details | binding site for residue AKG E 501 |
Chain | Residue |
E | LYS88 |
E | GLY90 |
E | MET109 |
E | LYS112 |
E | LYS124 |
E | ALA162 |
E | PRO163 |
E | ASP164 |
E | ARG204 |
E | ASN335 |
E | VAL364 |
E | SER367 |
E | NAD500 |
E | HOH682 |
site_id | AD6 |
Number of Residues | 2 |
Details | binding site for residue EDO E 502 |
Chain | Residue |
E | VAL409 |
E | HOH823 |
site_id | AD7 |
Number of Residues | 28 |
Details | binding site for residue NAD F 500 |
Chain | Residue |
F | ARG92 |
F | ASP164 |
F | VAL165 |
F | ASN166 |
F | ARG204 |
F | THR208 |
F | GLN235 |
F | GLY236 |
F | PHE237 |
F | GLY238 |
F | ASN239 |
F | VAL240 |
F | ASP260 |
F | HIS261 |
F | ALA311 |
F | ALA312 |
F | LEU313 |
F | GLY333 |
F | ALA334 |
F | ASN335 |
F | AKG501 |
F | HOH626 |
F | HOH645 |
F | HOH649 |
F | HOH668 |
F | HOH736 |
F | HOH800 |
F | HOH802 |
site_id | AD8 |
Number of Residues | 14 |
Details | binding site for residue AKG F 501 |
Chain | Residue |
F | LYS88 |
F | GLY89 |
F | GLY90 |
F | MET109 |
F | LYS112 |
F | LYS124 |
F | ALA162 |
F | ARG204 |
F | ASN335 |
F | GLY363 |
F | VAL364 |
F | SER367 |
F | NAD500 |
F | HOH727 |
site_id | AD9 |
Number of Residues | 2 |
Details | binding site for residue EDO F 502 |
Chain | Residue |
F | ALA404 |
F | VAL409 |
Functional Information from PROSITE/UniProt
site_id | PS00074 |
Number of Residues | 14 |
Details | GLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. VpyGGAKgGirvDP |
Chain | Residue | Details |
A | VAL118-PRO131 |