4XDS
Deoxyguanosinetriphosphate Triphosphohydrolase from Escherichia coli with Nickel
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003697 | molecular_function | single-stranded DNA binding |
A | 0003924 | molecular_function | GTPase activity |
A | 0006203 | biological_process | dGTP catabolic process |
A | 0008832 | molecular_function | dGTPase activity |
A | 0015949 | biological_process | nucleobase-containing small molecule interconversion |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016793 | molecular_function | triphosphoric monoester hydrolase activity |
A | 0030145 | molecular_function | manganese ion binding |
A | 0042802 | molecular_function | identical protein binding |
A | 0043099 | biological_process | pyrimidine deoxyribonucleoside salvage |
A | 0050897 | molecular_function | cobalt ion binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003697 | molecular_function | single-stranded DNA binding |
B | 0003924 | molecular_function | GTPase activity |
B | 0006203 | biological_process | dGTP catabolic process |
B | 0008832 | molecular_function | dGTPase activity |
B | 0015949 | biological_process | nucleobase-containing small molecule interconversion |
B | 0016787 | molecular_function | hydrolase activity |
B | 0016793 | molecular_function | triphosphoric monoester hydrolase activity |
B | 0030145 | molecular_function | manganese ion binding |
B | 0042802 | molecular_function | identical protein binding |
B | 0043099 | biological_process | pyrimidine deoxyribonucleoside salvage |
B | 0050897 | molecular_function | cobalt ion binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0003697 | molecular_function | single-stranded DNA binding |
C | 0003924 | molecular_function | GTPase activity |
C | 0006203 | biological_process | dGTP catabolic process |
C | 0008832 | molecular_function | dGTPase activity |
C | 0015949 | biological_process | nucleobase-containing small molecule interconversion |
C | 0016787 | molecular_function | hydrolase activity |
C | 0016793 | molecular_function | triphosphoric monoester hydrolase activity |
C | 0030145 | molecular_function | manganese ion binding |
C | 0042802 | molecular_function | identical protein binding |
C | 0043099 | biological_process | pyrimidine deoxyribonucleoside salvage |
C | 0050897 | molecular_function | cobalt ion binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0003697 | molecular_function | single-stranded DNA binding |
D | 0003924 | molecular_function | GTPase activity |
D | 0006203 | biological_process | dGTP catabolic process |
D | 0008832 | molecular_function | dGTPase activity |
D | 0015949 | biological_process | nucleobase-containing small molecule interconversion |
D | 0016787 | molecular_function | hydrolase activity |
D | 0016793 | molecular_function | triphosphoric monoester hydrolase activity |
D | 0030145 | molecular_function | manganese ion binding |
D | 0042802 | molecular_function | identical protein binding |
D | 0043099 | biological_process | pyrimidine deoxyribonucleoside salvage |
D | 0050897 | molecular_function | cobalt ion binding |
E | 0000287 | molecular_function | magnesium ion binding |
E | 0003697 | molecular_function | single-stranded DNA binding |
E | 0003924 | molecular_function | GTPase activity |
E | 0006203 | biological_process | dGTP catabolic process |
E | 0008832 | molecular_function | dGTPase activity |
E | 0015949 | biological_process | nucleobase-containing small molecule interconversion |
E | 0016787 | molecular_function | hydrolase activity |
E | 0016793 | molecular_function | triphosphoric monoester hydrolase activity |
E | 0030145 | molecular_function | manganese ion binding |
E | 0042802 | molecular_function | identical protein binding |
E | 0043099 | biological_process | pyrimidine deoxyribonucleoside salvage |
E | 0050897 | molecular_function | cobalt ion binding |
F | 0000287 | molecular_function | magnesium ion binding |
F | 0003697 | molecular_function | single-stranded DNA binding |
F | 0003924 | molecular_function | GTPase activity |
F | 0006203 | biological_process | dGTP catabolic process |
F | 0008832 | molecular_function | dGTPase activity |
F | 0015949 | biological_process | nucleobase-containing small molecule interconversion |
F | 0016787 | molecular_function | hydrolase activity |
F | 0016793 | molecular_function | triphosphoric monoester hydrolase activity |
F | 0030145 | molecular_function | manganese ion binding |
F | 0042802 | molecular_function | identical protein binding |
F | 0043099 | biological_process | pyrimidine deoxyribonucleoside salvage |
F | 0050897 | molecular_function | cobalt ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue NI A 601 |
Chain | Residue |
A | HIS69 |
A | HIS117 |
A | ASP268 |
A | HOH1001 |
A | HOH1002 |
A | HOH1003 |
site_id | AC2 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 602 |
Chain | Residue |
A | LYS232 |
A | ASN186 |
A | LYS211 |
A | TYR212 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 603 |
Chain | Residue |
A | ARG139 |
A | SER156 |
A | ARG415 |
A | SER419 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 604 |
Chain | Residue |
A | ARG433 |
A | VAL434 |
A | LYS435 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue SO4 A 605 |
Chain | Residue |
A | ARG38 |
A | ASN200 |
B | ARG326 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 606 |
Chain | Residue |
A | ARG15 |
A | HIS194 |
A | TYR242 |
A | ARG245 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue SO4 A 607 |
Chain | Residue |
A | ARG442 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 608 |
Chain | Residue |
A | LEU88 |
A | LYS89 |
A | LYS92 |
A | LEU93 |
A | LEU94 |
A | GLU95 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 609 |
Chain | Residue |
A | ARG326 |
A | TYR335 |
B | ARG38 |
B | ASN200 |
site_id | AD1 |
Number of Residues | 1 |
Details | binding site for residue SO4 A 610 |
Chain | Residue |
A | GLN290 |
site_id | AD2 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 611 |
Chain | Residue |
A | SER448 |
A | THR449 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue NI B 601 |
Chain | Residue |
B | HIS69 |
B | HIS117 |
B | ASP268 |
B | HOH1001 |
B | HOH1002 |
B | HOH1003 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 602 |
Chain | Residue |
B | ASN186 |
B | LYS211 |
B | TYR212 |
B | LYS232 |
site_id | AD5 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 603 |
Chain | Residue |
B | ARG139 |
B | ARG415 |
B | SER419 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 604 |
Chain | Residue |
B | LYS431 |
B | ARG433 |
B | VAL434 |
B | LYS435 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 605 |
Chain | Residue |
B | ARG15 |
B | HIS194 |
B | TYR242 |
site_id | AD8 |
Number of Residues | 1 |
Details | binding site for residue SO4 B 606 |
Chain | Residue |
B | ARG442 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 607 |
Chain | Residue |
B | LYS92 |
B | LEU93 |
B | LEU94 |
B | GLU95 |
site_id | AE1 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 608 |
Chain | Residue |
B | SER448 |
B | THR449 |
site_id | AE2 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 609 |
Chain | Residue |
A | GLN3 |
B | SER156 |
B | ARG161 |
site_id | AE3 |
Number of Residues | 6 |
Details | binding site for residue NI C 601 |
Chain | Residue |
C | HIS69 |
C | HIS117 |
C | ASP268 |
C | HOH1001 |
C | HOH1002 |
C | HOH1003 |
site_id | AE4 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 602 |
Chain | Residue |
C | ASN186 |
C | LYS211 |
C | TYR212 |
C | LYS232 |
site_id | AE5 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 603 |
Chain | Residue |
C | ARG139 |
C | SER156 |
C | ARG415 |
C | SER419 |
site_id | AE6 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 604 |
Chain | Residue |
C | ARG433 |
C | VAL434 |
C | LYS435 |
site_id | AE7 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 605 |
Chain | Residue |
C | ARG15 |
C | HIS194 |
C | TYR242 |
C | ARG245 |
site_id | AE8 |
Number of Residues | 1 |
Details | binding site for residue SO4 C 606 |
Chain | Residue |
C | ARG442 |
site_id | AE9 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 607 |
Chain | Residue |
C | ARG326 |
C | TYR335 |
D | ARG17 |
D | ARG38 |
D | ASN200 |
site_id | AF1 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 608 |
Chain | Residue |
C | HIS13 |
C | GLN20 |
C | GLY21 |
site_id | AF2 |
Number of Residues | 1 |
Details | binding site for residue SO4 C 609 |
Chain | Residue |
C | ARG161 |
site_id | AF3 |
Number of Residues | 9 |
Details | binding site for residue SO4 C 610 |
Chain | Residue |
C | LEU210 |
C | THR213 |
C | TYR235 |
C | ILE243 |
C | ARG247 |
C | ALA253 |
C | LEU254 |
C | TYR255 |
C | SER256 |
site_id | AF4 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 611 |
Chain | Residue |
C | ASN365 |
C | HIS366 |
site_id | AF5 |
Number of Residues | 1 |
Details | binding site for residue SO4 C 612 |
Chain | Residue |
C | THR449 |
site_id | AF6 |
Number of Residues | 3 |
Details | binding site for residue SO4 C 613 |
Chain | Residue |
C | HIS182 |
C | ARG214 |
C | LYS231 |
site_id | AF7 |
Number of Residues | 4 |
Details | binding site for residue SO4 C 614 |
Chain | Residue |
C | ARG47 |
C | MET197 |
C | ARG450 |
C | HIS451 |
site_id | AF8 |
Number of Residues | 2 |
Details | binding site for residue SO4 C 615 |
Chain | Residue |
C | ARG15 |
C | TYR16 |
site_id | AF9 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 601 |
Chain | Residue |
C | ARG17 |
C | ARG38 |
C | ASN200 |
D | ARG326 |
D | TYR335 |
site_id | AG1 |
Number of Residues | 6 |
Details | binding site for residue NI D 602 |
Chain | Residue |
D | HIS69 |
D | HIS117 |
D | ASP268 |
D | HOH1001 |
D | HOH1002 |
D | HOH1003 |
site_id | AG2 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 603 |
Chain | Residue |
D | ASN186 |
D | LYS211 |
D | TYR212 |
D | LYS232 |
site_id | AG3 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 604 |
Chain | Residue |
D | ARG139 |
D | ARG415 |
D | SER419 |
site_id | AG4 |
Number of Residues | 3 |
Details | binding site for residue SO4 D 605 |
Chain | Residue |
D | ARG433 |
D | VAL434 |
D | LYS435 |
site_id | AG5 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 606 |
Chain | Residue |
D | ARG15 |
D | HIS194 |
D | TYR242 |
D | ARG245 |
site_id | AG6 |
Number of Residues | 1 |
Details | binding site for residue SO4 D 607 |
Chain | Residue |
D | ARG442 |
site_id | AG7 |
Number of Residues | 5 |
Details | binding site for residue SO4 D 608 |
Chain | Residue |
D | LYS89 |
D | LYS92 |
D | LEU93 |
D | LEU94 |
D | GLU95 |
site_id | AG8 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 609 |
Chain | Residue |
D | ARG137 |
D | GLN178 |
D | HIS182 |
D | SO4612 |
site_id | AG9 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 610 |
Chain | Residue |
D | HIS13 |
D | HIS13 |
D | GLN20 |
D | GLY21 |
site_id | AH1 |
Number of Residues | 1 |
Details | binding site for residue SO4 D 611 |
Chain | Residue |
D | ARG15 |
site_id | AH2 |
Number of Residues | 4 |
Details | binding site for residue SO4 D 612 |
Chain | Residue |
D | HIS182 |
D | ARG214 |
D | LYS231 |
D | SO4609 |
site_id | AH3 |
Number of Residues | 8 |
Details | binding site for residue SO4 D 614 |
Chain | Residue |
D | LEU210 |
D | THR213 |
D | TYR235 |
D | ILE243 |
D | ARG247 |
D | ALA253 |
D | TYR255 |
D | SER256 |
site_id | AH4 |
Number of Residues | 6 |
Details | binding site for residue NI E 601 |
Chain | Residue |
E | HIS69 |
E | HIS117 |
E | ASP268 |
E | HOH1001 |
E | HOH1002 |
E | HOH1003 |
site_id | AH5 |
Number of Residues | 4 |
Details | binding site for residue SO4 E 602 |
Chain | Residue |
E | ASN186 |
E | LYS211 |
E | TYR212 |
E | LYS232 |
site_id | AH6 |
Number of Residues | 3 |
Details | binding site for residue SO4 E 603 |
Chain | Residue |
E | ARG139 |
E | ARG415 |
E | SER419 |
site_id | AH7 |
Number of Residues | 3 |
Details | binding site for residue SO4 E 604 |
Chain | Residue |
E | ARG433 |
E | VAL434 |
E | LYS435 |
site_id | AH8 |
Number of Residues | 4 |
Details | binding site for residue SO4 E 605 |
Chain | Residue |
E | ARG15 |
E | HIS194 |
E | TYR242 |
E | ARG245 |
site_id | AH9 |
Number of Residues | 1 |
Details | binding site for residue SO4 E 606 |
Chain | Residue |
E | ARG442 |
site_id | AI1 |
Number of Residues | 5 |
Details | binding site for residue SO4 E 607 |
Chain | Residue |
E | LYS89 |
E | LYS92 |
E | LEU93 |
E | LEU94 |
E | GLU95 |
site_id | AI2 |
Number of Residues | 5 |
Details | binding site for residue SO4 E 608 |
Chain | Residue |
E | ARG326 |
E | TYR335 |
F | ARG17 |
F | ARG38 |
F | ASN200 |
site_id | AI3 |
Number of Residues | 4 |
Details | binding site for residue SO4 E 609 |
Chain | Residue |
E | PRO346 |
E | TYR347 |
E | GLN350 |
E | SO4610 |
site_id | AI4 |
Number of Residues | 2 |
Details | binding site for residue SO4 E 610 |
Chain | Residue |
E | ARG87 |
E | SO4609 |
site_id | AI5 |
Number of Residues | 2 |
Details | binding site for residue SO4 E 611 |
Chain | Residue |
E | HIS13 |
E | GLY21 |
site_id | AI6 |
Number of Residues | 3 |
Details | binding site for residue SO4 E 612 |
Chain | Residue |
E | ARG59 |
E | ASN60 |
F | TYR492 |
site_id | AI7 |
Number of Residues | 1 |
Details | binding site for residue SO4 E 613 |
Chain | Residue |
E | ARG499 |
site_id | AI8 |
Number of Residues | 3 |
Details | binding site for residue SO4 E 614 |
Chain | Residue |
E | HIS182 |
E | ARG214 |
E | LYS231 |
site_id | AI9 |
Number of Residues | 3 |
Details | binding site for residue SO4 E 615 |
Chain | Residue |
E | ARG137 |
E | GLN178 |
E | HIS182 |
site_id | AJ1 |
Number of Residues | 9 |
Details | binding site for residue SO4 E 616 |
Chain | Residue |
E | LEU210 |
E | THR213 |
E | TYR235 |
E | ILE243 |
E | ARG247 |
E | ALA253 |
E | LEU254 |
E | TYR255 |
E | SER256 |
site_id | AJ2 |
Number of Residues | 5 |
Details | binding site for residue SO4 F 601 |
Chain | Residue |
E | ARG17 |
E | ARG38 |
E | ASN200 |
F | ARG326 |
F | TYR335 |
site_id | AJ3 |
Number of Residues | 6 |
Details | binding site for residue NI F 602 |
Chain | Residue |
F | HIS69 |
F | HIS117 |
F | ASP268 |
F | HOH1001 |
F | HOH1002 |
F | HOH1003 |
site_id | AJ4 |
Number of Residues | 4 |
Details | binding site for residue SO4 F 603 |
Chain | Residue |
F | ASN186 |
F | LYS211 |
F | TYR212 |
F | LYS232 |
site_id | AJ5 |
Number of Residues | 4 |
Details | binding site for residue SO4 F 604 |
Chain | Residue |
F | ARG139 |
F | SER156 |
F | ARG415 |
F | SER419 |
site_id | AJ6 |
Number of Residues | 4 |
Details | binding site for residue SO4 F 605 |
Chain | Residue |
F | LYS431 |
F | ARG433 |
F | VAL434 |
F | LYS435 |
site_id | AJ7 |
Number of Residues | 5 |
Details | binding site for residue SO4 F 606 |
Chain | Residue |
F | ARG15 |
F | TYR16 |
F | HIS194 |
F | TYR242 |
F | ARG245 |
site_id | AJ8 |
Number of Residues | 1 |
Details | binding site for residue SO4 F 607 |
Chain | Residue |
F | ARG442 |
site_id | AJ9 |
Number of Residues | 3 |
Details | binding site for residue SO4 F 608 |
Chain | Residue |
F | LYS92 |
F | LEU94 |
F | GLU95 |
site_id | AK1 |
Number of Residues | 8 |
Details | binding site for residue SO4 F 609 |
Chain | Residue |
F | LEU210 |
F | THR213 |
F | TYR235 |
F | ILE243 |
F | ARG247 |
F | ALA253 |
F | TYR255 |
F | SER256 |
site_id | AK2 |
Number of Residues | 4 |
Details | binding site for residue SO4 F 610 |
Chain | Residue |
F | LYS8 |
F | GLY21 |
F | VAL22 |
F | ASN251 |
site_id | AK3 |
Number of Residues | 3 |
Details | binding site for residue SO4 F 611 |
Chain | Residue |
F | ARG137 |
F | GLN178 |
F | HIS182 |
site_id | AK4 |
Number of Residues | 5 |
Details | binding site for residue SO4 F 612 |
Chain | Residue |
F | ARG7 |
F | LYS23 |
F | THR24 |
F | GLU25 |
F | GLU101 |
site_id | AK5 |
Number of Residues | 1 |
Details | binding site for residue SO4 F 613 |
Chain | Residue |
F | LYS175 |
site_id | AK6 |
Number of Residues | 3 |
Details | binding site for residue SO4 F 614 |
Chain | Residue |
F | HIS13 |
F | GLN20 |
F | GLY21 |
site_id | AK7 |
Number of Residues | 3 |
Details | binding site for residue SO4 F 615 |
Chain | Residue |
F | ARG47 |
F | ARG450 |
F | SO4618 |
site_id | AK8 |
Number of Residues | 1 |
Details | binding site for residue SO4 F 616 |
Chain | Residue |
F | ARG163 |
site_id | AK9 |
Number of Residues | 2 |
Details | binding site for residue SO4 F 617 |
Chain | Residue |
F | SER156 |
F | ARG161 |
site_id | AL1 |
Number of Residues | 2 |
Details | binding site for residue SO4 F 618 |
Chain | Residue |
F | THR449 |
F | SO4615 |
site_id | AL2 |
Number of Residues | 4 |
Details | binding site for residue SO4 F 619 |
Chain | Residue |
F | HIS182 |
F | ARG214 |
F | LYS231 |
F | PRO233 |
site_id | AL3 |
Number of Residues | 2 |
Details | binding site for residue SO4 F 620 |
Chain | Residue |
F | ASN365 |
F | HIS366 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 5 |
Details | M-CSA 966 |
Chain | Residue | Details |
A | HIS69 | metal ligand |
A | HIS117 | metal ligand |
A | ASP118 | metal ligand |
A | ASP268 | metal ligand |
A | ARG442 | unknown |
site_id | MCSA2 |
Number of Residues | 5 |
Details | M-CSA 966 |
Chain | Residue | Details |
B | HIS69 | metal ligand |
B | HIS117 | metal ligand |
B | ASP118 | metal ligand |
B | ASP268 | metal ligand |
B | ARG442 | unknown |
site_id | MCSA3 |
Number of Residues | 5 |
Details | M-CSA 966 |
Chain | Residue | Details |
C | HIS69 | metal ligand |
C | HIS117 | metal ligand |
C | ASP118 | metal ligand |
C | ASP268 | metal ligand |
C | ARG442 | unknown |
site_id | MCSA4 |
Number of Residues | 5 |
Details | M-CSA 966 |
Chain | Residue | Details |
D | HIS69 | metal ligand |
D | HIS117 | metal ligand |
D | ASP118 | metal ligand |
D | ASP268 | metal ligand |
D | ARG442 | unknown |
site_id | MCSA5 |
Number of Residues | 5 |
Details | M-CSA 966 |
Chain | Residue | Details |
E | HIS69 | metal ligand |
E | HIS117 | metal ligand |
E | ASP118 | metal ligand |
E | ASP268 | metal ligand |
E | ARG442 | unknown |
site_id | MCSA6 |
Number of Residues | 5 |
Details | M-CSA 966 |
Chain | Residue | Details |
F | HIS69 | metal ligand |
F | HIS117 | metal ligand |
F | ASP118 | metal ligand |
F | ASP268 | metal ligand |
F | ARG442 | unknown |