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4XDS

Deoxyguanosinetriphosphate Triphosphohydrolase from Escherichia coli with Nickel

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003697molecular_functionsingle-stranded DNA binding
A0003924molecular_functionGTPase activity
A0006203biological_processdGTP catabolic process
A0008832molecular_functiondGTPase activity
A0015949biological_processnucleobase-containing small molecule interconversion
A0016787molecular_functionhydrolase activity
A0016793molecular_functiontriphosphoric monoester hydrolase activity
A0030145molecular_functionmanganese ion binding
A0042802molecular_functionidentical protein binding
A0043099biological_processpyrimidine deoxyribonucleoside salvage
A0050897molecular_functioncobalt ion binding
B0000287molecular_functionmagnesium ion binding
B0003697molecular_functionsingle-stranded DNA binding
B0003924molecular_functionGTPase activity
B0006203biological_processdGTP catabolic process
B0008832molecular_functiondGTPase activity
B0015949biological_processnucleobase-containing small molecule interconversion
B0016787molecular_functionhydrolase activity
B0016793molecular_functiontriphosphoric monoester hydrolase activity
B0030145molecular_functionmanganese ion binding
B0042802molecular_functionidentical protein binding
B0043099biological_processpyrimidine deoxyribonucleoside salvage
B0050897molecular_functioncobalt ion binding
C0000287molecular_functionmagnesium ion binding
C0003697molecular_functionsingle-stranded DNA binding
C0003924molecular_functionGTPase activity
C0006203biological_processdGTP catabolic process
C0008832molecular_functiondGTPase activity
C0015949biological_processnucleobase-containing small molecule interconversion
C0016787molecular_functionhydrolase activity
C0016793molecular_functiontriphosphoric monoester hydrolase activity
C0030145molecular_functionmanganese ion binding
C0042802molecular_functionidentical protein binding
C0043099biological_processpyrimidine deoxyribonucleoside salvage
C0050897molecular_functioncobalt ion binding
D0000287molecular_functionmagnesium ion binding
D0003697molecular_functionsingle-stranded DNA binding
D0003924molecular_functionGTPase activity
D0006203biological_processdGTP catabolic process
D0008832molecular_functiondGTPase activity
D0015949biological_processnucleobase-containing small molecule interconversion
D0016787molecular_functionhydrolase activity
D0016793molecular_functiontriphosphoric monoester hydrolase activity
D0030145molecular_functionmanganese ion binding
D0042802molecular_functionidentical protein binding
D0043099biological_processpyrimidine deoxyribonucleoside salvage
D0050897molecular_functioncobalt ion binding
E0000287molecular_functionmagnesium ion binding
E0003697molecular_functionsingle-stranded DNA binding
E0003924molecular_functionGTPase activity
E0006203biological_processdGTP catabolic process
E0008832molecular_functiondGTPase activity
E0015949biological_processnucleobase-containing small molecule interconversion
E0016787molecular_functionhydrolase activity
E0016793molecular_functiontriphosphoric monoester hydrolase activity
E0030145molecular_functionmanganese ion binding
E0042802molecular_functionidentical protein binding
E0043099biological_processpyrimidine deoxyribonucleoside salvage
E0050897molecular_functioncobalt ion binding
F0000287molecular_functionmagnesium ion binding
F0003697molecular_functionsingle-stranded DNA binding
F0003924molecular_functionGTPase activity
F0006203biological_processdGTP catabolic process
F0008832molecular_functiondGTPase activity
F0015949biological_processnucleobase-containing small molecule interconversion
F0016787molecular_functionhydrolase activity
F0016793molecular_functiontriphosphoric monoester hydrolase activity
F0030145molecular_functionmanganese ion binding
F0042802molecular_functionidentical protein binding
F0043099biological_processpyrimidine deoxyribonucleoside salvage
F0050897molecular_functioncobalt ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NI A 601
ChainResidue
AHIS69
AHIS117
AASP268
AHOH1001
AHOH1002
AHOH1003

site_idAC2
Number of Residues4
Detailsbinding site for residue SO4 A 602
ChainResidue
ALYS232
AASN186
ALYS211
ATYR212

site_idAC3
Number of Residues4
Detailsbinding site for residue SO4 A 603
ChainResidue
AARG139
ASER156
AARG415
ASER419

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 604
ChainResidue
AARG433
AVAL434
ALYS435

site_idAC5
Number of Residues3
Detailsbinding site for residue SO4 A 605
ChainResidue
AARG38
AASN200
BARG326

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 606
ChainResidue
AARG15
AHIS194
ATYR242
AARG245

site_idAC7
Number of Residues1
Detailsbinding site for residue SO4 A 607
ChainResidue
AARG442

site_idAC8
Number of Residues6
Detailsbinding site for residue SO4 A 608
ChainResidue
ALEU88
ALYS89
ALYS92
ALEU93
ALEU94
AGLU95

site_idAC9
Number of Residues4
Detailsbinding site for residue SO4 A 609
ChainResidue
AARG326
ATYR335
BARG38
BASN200

site_idAD1
Number of Residues1
Detailsbinding site for residue SO4 A 610
ChainResidue
AGLN290

site_idAD2
Number of Residues2
Detailsbinding site for residue SO4 A 611
ChainResidue
ASER448
ATHR449

site_idAD3
Number of Residues6
Detailsbinding site for residue NI B 601
ChainResidue
BHIS69
BHIS117
BASP268
BHOH1001
BHOH1002
BHOH1003

site_idAD4
Number of Residues4
Detailsbinding site for residue SO4 B 602
ChainResidue
BASN186
BLYS211
BTYR212
BLYS232

site_idAD5
Number of Residues3
Detailsbinding site for residue SO4 B 603
ChainResidue
BARG139
BARG415
BSER419

site_idAD6
Number of Residues4
Detailsbinding site for residue SO4 B 604
ChainResidue
BLYS431
BARG433
BVAL434
BLYS435

site_idAD7
Number of Residues3
Detailsbinding site for residue SO4 B 605
ChainResidue
BARG15
BHIS194
BTYR242

site_idAD8
Number of Residues1
Detailsbinding site for residue SO4 B 606
ChainResidue
BARG442

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 B 607
ChainResidue
BLYS92
BLEU93
BLEU94
BGLU95

site_idAE1
Number of Residues2
Detailsbinding site for residue SO4 B 608
ChainResidue
BSER448
BTHR449

site_idAE2
Number of Residues3
Detailsbinding site for residue SO4 B 609
ChainResidue
AGLN3
BSER156
BARG161

site_idAE3
Number of Residues6
Detailsbinding site for residue NI C 601
ChainResidue
CHIS69
CHIS117
CASP268
CHOH1001
CHOH1002
CHOH1003

site_idAE4
Number of Residues4
Detailsbinding site for residue SO4 C 602
ChainResidue
CASN186
CLYS211
CTYR212
CLYS232

site_idAE5
Number of Residues4
Detailsbinding site for residue SO4 C 603
ChainResidue
CARG139
CSER156
CARG415
CSER419

site_idAE6
Number of Residues3
Detailsbinding site for residue SO4 C 604
ChainResidue
CARG433
CVAL434
CLYS435

site_idAE7
Number of Residues4
Detailsbinding site for residue SO4 C 605
ChainResidue
CARG15
CHIS194
CTYR242
CARG245

site_idAE8
Number of Residues1
Detailsbinding site for residue SO4 C 606
ChainResidue
CARG442

site_idAE9
Number of Residues5
Detailsbinding site for residue SO4 C 607
ChainResidue
CARG326
CTYR335
DARG17
DARG38
DASN200

site_idAF1
Number of Residues3
Detailsbinding site for residue SO4 C 608
ChainResidue
CHIS13
CGLN20
CGLY21

site_idAF2
Number of Residues1
Detailsbinding site for residue SO4 C 609
ChainResidue
CARG161

site_idAF3
Number of Residues9
Detailsbinding site for residue SO4 C 610
ChainResidue
CLEU210
CTHR213
CTYR235
CILE243
CARG247
CALA253
CLEU254
CTYR255
CSER256

site_idAF4
Number of Residues2
Detailsbinding site for residue SO4 C 611
ChainResidue
CASN365
CHIS366

site_idAF5
Number of Residues1
Detailsbinding site for residue SO4 C 612
ChainResidue
CTHR449

site_idAF6
Number of Residues3
Detailsbinding site for residue SO4 C 613
ChainResidue
CHIS182
CARG214
CLYS231

site_idAF7
Number of Residues4
Detailsbinding site for residue SO4 C 614
ChainResidue
CARG47
CMET197
CARG450
CHIS451

site_idAF8
Number of Residues2
Detailsbinding site for residue SO4 C 615
ChainResidue
CARG15
CTYR16

site_idAF9
Number of Residues5
Detailsbinding site for residue SO4 D 601
ChainResidue
CARG17
CARG38
CASN200
DARG326
DTYR335

site_idAG1
Number of Residues6
Detailsbinding site for residue NI D 602
ChainResidue
DHIS69
DHIS117
DASP268
DHOH1001
DHOH1002
DHOH1003

site_idAG2
Number of Residues4
Detailsbinding site for residue SO4 D 603
ChainResidue
DASN186
DLYS211
DTYR212
DLYS232

site_idAG3
Number of Residues3
Detailsbinding site for residue SO4 D 604
ChainResidue
DARG139
DARG415
DSER419

site_idAG4
Number of Residues3
Detailsbinding site for residue SO4 D 605
ChainResidue
DARG433
DVAL434
DLYS435

site_idAG5
Number of Residues4
Detailsbinding site for residue SO4 D 606
ChainResidue
DARG15
DHIS194
DTYR242
DARG245

site_idAG6
Number of Residues1
Detailsbinding site for residue SO4 D 607
ChainResidue
DARG442

site_idAG7
Number of Residues5
Detailsbinding site for residue SO4 D 608
ChainResidue
DLYS89
DLYS92
DLEU93
DLEU94
DGLU95

site_idAG8
Number of Residues4
Detailsbinding site for residue SO4 D 609
ChainResidue
DARG137
DGLN178
DHIS182
DSO4612

site_idAG9
Number of Residues4
Detailsbinding site for residue SO4 D 610
ChainResidue
DHIS13
DHIS13
DGLN20
DGLY21

site_idAH1
Number of Residues1
Detailsbinding site for residue SO4 D 611
ChainResidue
DARG15

site_idAH2
Number of Residues4
Detailsbinding site for residue SO4 D 612
ChainResidue
DHIS182
DARG214
DLYS231
DSO4609

site_idAH3
Number of Residues8
Detailsbinding site for residue SO4 D 614
ChainResidue
DLEU210
DTHR213
DTYR235
DILE243
DARG247
DALA253
DTYR255
DSER256

site_idAH4
Number of Residues6
Detailsbinding site for residue NI E 601
ChainResidue
EHIS69
EHIS117
EASP268
EHOH1001
EHOH1002
EHOH1003

site_idAH5
Number of Residues4
Detailsbinding site for residue SO4 E 602
ChainResidue
EASN186
ELYS211
ETYR212
ELYS232

site_idAH6
Number of Residues3
Detailsbinding site for residue SO4 E 603
ChainResidue
EARG139
EARG415
ESER419

site_idAH7
Number of Residues3
Detailsbinding site for residue SO4 E 604
ChainResidue
EARG433
EVAL434
ELYS435

site_idAH8
Number of Residues4
Detailsbinding site for residue SO4 E 605
ChainResidue
EARG15
EHIS194
ETYR242
EARG245

site_idAH9
Number of Residues1
Detailsbinding site for residue SO4 E 606
ChainResidue
EARG442

site_idAI1
Number of Residues5
Detailsbinding site for residue SO4 E 607
ChainResidue
ELYS89
ELYS92
ELEU93
ELEU94
EGLU95

site_idAI2
Number of Residues5
Detailsbinding site for residue SO4 E 608
ChainResidue
EARG326
ETYR335
FARG17
FARG38
FASN200

site_idAI3
Number of Residues4
Detailsbinding site for residue SO4 E 609
ChainResidue
EPRO346
ETYR347
EGLN350
ESO4610

site_idAI4
Number of Residues2
Detailsbinding site for residue SO4 E 610
ChainResidue
EARG87
ESO4609

site_idAI5
Number of Residues2
Detailsbinding site for residue SO4 E 611
ChainResidue
EHIS13
EGLY21

site_idAI6
Number of Residues3
Detailsbinding site for residue SO4 E 612
ChainResidue
EARG59
EASN60
FTYR492

site_idAI7
Number of Residues1
Detailsbinding site for residue SO4 E 613
ChainResidue
EARG499

site_idAI8
Number of Residues3
Detailsbinding site for residue SO4 E 614
ChainResidue
EHIS182
EARG214
ELYS231

site_idAI9
Number of Residues3
Detailsbinding site for residue SO4 E 615
ChainResidue
EARG137
EGLN178
EHIS182

site_idAJ1
Number of Residues9
Detailsbinding site for residue SO4 E 616
ChainResidue
ELEU210
ETHR213
ETYR235
EILE243
EARG247
EALA253
ELEU254
ETYR255
ESER256

site_idAJ2
Number of Residues5
Detailsbinding site for residue SO4 F 601
ChainResidue
EARG17
EARG38
EASN200
FARG326
FTYR335

site_idAJ3
Number of Residues6
Detailsbinding site for residue NI F 602
ChainResidue
FHIS69
FHIS117
FASP268
FHOH1001
FHOH1002
FHOH1003

site_idAJ4
Number of Residues4
Detailsbinding site for residue SO4 F 603
ChainResidue
FASN186
FLYS211
FTYR212
FLYS232

site_idAJ5
Number of Residues4
Detailsbinding site for residue SO4 F 604
ChainResidue
FARG139
FSER156
FARG415
FSER419

site_idAJ6
Number of Residues4
Detailsbinding site for residue SO4 F 605
ChainResidue
FLYS431
FARG433
FVAL434
FLYS435

site_idAJ7
Number of Residues5
Detailsbinding site for residue SO4 F 606
ChainResidue
FARG15
FTYR16
FHIS194
FTYR242
FARG245

site_idAJ8
Number of Residues1
Detailsbinding site for residue SO4 F 607
ChainResidue
FARG442

site_idAJ9
Number of Residues3
Detailsbinding site for residue SO4 F 608
ChainResidue
FLYS92
FLEU94
FGLU95

site_idAK1
Number of Residues8
Detailsbinding site for residue SO4 F 609
ChainResidue
FLEU210
FTHR213
FTYR235
FILE243
FARG247
FALA253
FTYR255
FSER256

site_idAK2
Number of Residues4
Detailsbinding site for residue SO4 F 610
ChainResidue
FLYS8
FGLY21
FVAL22
FASN251

site_idAK3
Number of Residues3
Detailsbinding site for residue SO4 F 611
ChainResidue
FARG137
FGLN178
FHIS182

site_idAK4
Number of Residues5
Detailsbinding site for residue SO4 F 612
ChainResidue
FARG7
FLYS23
FTHR24
FGLU25
FGLU101

site_idAK5
Number of Residues1
Detailsbinding site for residue SO4 F 613
ChainResidue
FLYS175

site_idAK6
Number of Residues3
Detailsbinding site for residue SO4 F 614
ChainResidue
FHIS13
FGLN20
FGLY21

site_idAK7
Number of Residues3
Detailsbinding site for residue SO4 F 615
ChainResidue
FARG47
FARG450
FSO4618

site_idAK8
Number of Residues1
Detailsbinding site for residue SO4 F 616
ChainResidue
FARG163

site_idAK9
Number of Residues2
Detailsbinding site for residue SO4 F 617
ChainResidue
FSER156
FARG161

site_idAL1
Number of Residues2
Detailsbinding site for residue SO4 F 618
ChainResidue
FTHR449
FSO4615

site_idAL2
Number of Residues4
Detailsbinding site for residue SO4 F 619
ChainResidue
FHIS182
FARG214
FLYS231
FPRO233

site_idAL3
Number of Residues2
Detailsbinding site for residue SO4 F 620
ChainResidue
FASN365
FHIS366

Catalytic Information from CSA
site_idMCSA1
Number of Residues5
DetailsM-CSA 966
ChainResidueDetails
AHIS69metal ligand
AHIS117metal ligand
AASP118metal ligand
AASP268metal ligand
AARG442unknown

site_idMCSA2
Number of Residues5
DetailsM-CSA 966
ChainResidueDetails
BHIS69metal ligand
BHIS117metal ligand
BASP118metal ligand
BASP268metal ligand
BARG442unknown

site_idMCSA3
Number of Residues5
DetailsM-CSA 966
ChainResidueDetails
CHIS69metal ligand
CHIS117metal ligand
CASP118metal ligand
CASP268metal ligand
CARG442unknown

site_idMCSA4
Number of Residues5
DetailsM-CSA 966
ChainResidueDetails
DHIS69metal ligand
DHIS117metal ligand
DASP118metal ligand
DASP268metal ligand
DARG442unknown

site_idMCSA5
Number of Residues5
DetailsM-CSA 966
ChainResidueDetails
EHIS69metal ligand
EHIS117metal ligand
EASP118metal ligand
EASP268metal ligand
EARG442unknown

site_idMCSA6
Number of Residues5
DetailsM-CSA 966
ChainResidueDetails
FHIS69metal ligand
FHIS117metal ligand
FASP118metal ligand
FASP268metal ligand
FARG442unknown

237735

PDB entries from 2025-06-18

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