4X9D

High-resolution structure of Hfq from Methanococcus jannaschii in complex with UMP

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003723	molecular_function	RNA binding
A	0006355	biological_process	regulation of DNA-templated transcription
B	0003723	molecular_function	RNA binding
B	0006355	biological_process	regulation of DNA-templated transcription
C	0003723	molecular_function	RNA binding
C	0006355	biological_process	regulation of DNA-templated transcription
D	0003723	molecular_function	RNA binding
D	0006355	biological_process	regulation of DNA-templated transcription
E	0003723	molecular_function	RNA binding
E	0006355	biological_process	regulation of DNA-templated transcription
F	0003723	molecular_function	RNA binding
F	0006355	biological_process	regulation of DNA-templated transcription

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue PGE A 101

Chain	Residue
A	LYS27
A	LYS29
A	TYR71
D	LYS27
D	LYS29
D	GLU70

---

site_id	AC2
Number of Residues	5
Details	binding site for residue SO4 A 102

Chain	Residue
A	TYR71
F	SO4102
A	TYR19
A	ARG22
A	LYS26

---

site_id	AC3
Number of Residues	5
Details	binding site for residue NA A 103

Chain	Residue
A	TYR48
A	LYS63
A	HIS64
A	U5P104
B	U5P104

---

site_id	AC4
Number of Residues	13
Details	binding site for residue U5P A 104

Chain	Residue
A	GLU18
A	ASN47
A	TYR48
A	LYS63
A	NA103
A	HOH209
A	HOH225
B	U5P104
F	TYR48
F	PHE62
F	HIS64
F	NA103
F	U5P104

---

site_id	AC5
Number of Residues	2
Details	binding site for residue EDO B 101

Chain	Residue
B	LYS29
B	ASP39

---

site_id	AC6
Number of Residues	5
Details	binding site for residue NA B 102

Chain	Residue
B	HOH235
C	U5P104
C	HOH213
C	HOH240
C	HOH241

---

site_id	AC7
Number of Residues	5
Details	binding site for residue NA B 103

Chain	Residue
B	TYR48
B	LYS63
B	HIS64
B	U5P104
C	U5P104

---

site_id	AC8
Number of Residues	15
Details	binding site for residue U5P B 104

Chain	Residue
A	TYR48
A	PHE62
A	HIS64
A	NA103
A	U5P104
B	ASN47
B	TYR48
B	LYS63
B	NA103
B	HOH209
B	HOH233
B	HOH237
B	HOH239
C	U5P104
C	HOH240

---

site_id	AC9
Number of Residues	4
Details	binding site for residue PG4 C 101

Chain	Residue
B	THR43
C	ARG22
C	TYR71
C	HOH211

---

site_id	AD1
Number of Residues	5
Details	binding site for residue NA C 102

Chain	Residue
C	TYR48
C	LYS63
C	HIS64
C	U5P104
D	U5P101

---

site_id	AD2
Number of Residues	18
Details	binding site for residue U5P C 104

Chain	Residue
B	TYR48
B	PHE62
B	HIS64
B	NA102
B	NA103
B	U5P104
B	HOH207
B	HOH239
C	GLU18
C	ASN47
C	TYR48
C	LYS63
C	HIS64
C	NA102
C	HOH237
C	HOH240
C	HOH241
D	U5P101

---

site_id	AD3
Number of Residues	15
Details	binding site for residue U5P D 101

Chain	Residue
B	HOH239
C	TYR48
C	PHE62
C	HIS64
C	NA102
C	U5P104
C	HOH241
D	GLU18
D	ASN47
D	TYR48
D	LYS63
D	HIS64
D	HOH222
D	HOH235
E	U5P104

---

site_id	AD4
Number of Residues	9
Details	binding site for residue PG4 E 101

Chain	Residue
E	LYS29
E	ASP39
E	GLU70
E	TYR71
E	HOH205
F	ASN24
F	LYS26
F	TYR71
E	LYS27

---

site_id	AD5
Number of Residues	8
Details	binding site for residue PGE E 102

Chain	Residue
E	ASN24
E	LYS26
E	HOH203
E	HOH213
E	HOH239
F	LYS27
F	LYS29
F	HOH214

---

site_id	AD6
Number of Residues	1
Details	binding site for residue CL E 103

Chain	Residue
E	THR43

---

site_id	AD7
Number of Residues	14
Details	binding site for residue U5P E 104

Chain	Residue
D	TYR48
D	PHE62
D	HIS64
D	U5P101
D	HOH236
E	GLU18
E	ASN47
E	TYR48
E	PHE62
E	LYS63
E	HIS64
E	HOH225
E	HOH245
F	U5P104

---

site_id	AD8
Number of Residues	5
Details	binding site for residue PEG F 101

Chain	Residue
F	GLU36
F	VAL37
F	ARG57
F	HOH236
F	HOH244

---

site_id	AD9
Number of Residues	4
Details	binding site for residue SO4 F 102

Chain	Residue
A	TYR71
A	SO4102
F	THR43
F	MET51

---

site_id	AE1
Number of Residues	5
Details	binding site for residue NA F 103

Chain	Residue
A	U5P104
F	TYR48
F	LYS63
F	HIS64
F	U5P104

---

site_id	AE2
Number of Residues	15
Details	binding site for residue U5P F 104

Chain	Residue
A	U5P104
B	HOH239
E	TYR48
E	PHE62
E	HIS64
E	U5P104
F	GLU18
F	ASN47
F	TYR48
F	LYS63
F	HIS64
F	NA103
F	HOH223
F	HOH226
F	HOH245

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	168
Details	Domain: {"description":"Sm","evidences":[{"source":"PROSITE-ProRule","id":"PRU01346","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---