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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

4X31

Room temperature structure of bacteriorhodopsin from lipidic cubic phase obtained with serial millisecond crystallography using synchrotron radiation

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005216	molecular_function	monoatomic ion channel activity
A	0006811	biological_process	monoatomic ion transport
A	0016020	cellular_component	membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	9
Details	binding site for residue RET A 301

Chain	Residue
A	TRP86
A	THR90
A	TRP138
A	SER141
A	THR142
A	TRP182
A	TYR185
A	ASP212
A	LYS216

site_id	AC2
Number of Residues	6
Details	binding site for residue LI1 A 302

Chain	Residue
A	GLY21
A	THR24
A	LEU28
A	THR47
A	LEU48
A	TYR147

site_id	AC3
Number of Residues	2
Details	binding site for residue LI1 A 303

Chain	Residue
A	TYR64
A	ILE117

site_id	AC4
Number of Residues	2
Details	binding site for residue LI1 A 304

Chain	Residue
A	THR67
A	TRP80

site_id	AC5
Number of Residues	1
Details	binding site for residue LI1 A 305

Chain	Residue
A	ILE203

site_id	AC6
Number of Residues	1
Details	binding site for residue LI1 A 306

Chain	Residue
A	TYR133

Functional Information from PROSITE/UniProt

site_id	PS00327
Number of Residues	12
Details	BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. FMVLDVsAKvGF

Chain	Residue	Details
A	PHE208-PHE219

site_id	PS00950
Number of Residues	13
Details	BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYaDWlFTTPLLL

Chain	Residue	Details
A	ARG82-LEU94

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	19
Details	TRANSMEM: Helical; Name=Helix A => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	TRP10-VAL29

site_id	SWS_FT_FI2
Number of Residues	40
Details	TOPO_DOM: Cytoplasmic => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	LYS30-TYR43
A	LEU97-THR107
A	GLY155-LYS172

site_id	SWS_FT_FI3
Number of Residues	18
Details	TRANSMEM: Helical; Name=Helix B => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	ALA44-LEU62

site_id	SWS_FT_FI4
Number of Residues	33
Details	TOPO_DOM: Extracellular => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	GLY63-TYR79
A	THR128-ARG134
A	GLY192-ILE203

site_id	SWS_FT_FI5
Number of Residues	16
Details	TRANSMEM: Helical; Name=Helix C => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	TRP80-ASP96

site_id	SWS_FT_FI6
Number of Residues	19
Details	TRANSMEM: Helical; Name=Helix D => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	ILE108-LEU127

site_id	SWS_FT_FI7
Number of Residues	19
Details	TRANSMEM: Helical; Name=Helix E => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	PHE135-PHE154

site_id	SWS_FT_FI8
Number of Residues	18
Details	TRANSMEM: Helical; Name=Helix F => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	VAL173-ILE191

site_id	SWS_FT_FI9
Number of Residues	19
Details	TRANSMEM: Helical; Name=Helix G => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:28008064, ECO:0007744\|PDB:1C3W

Chain	Residue	Details
A	GLU204-LEU223

site_id	SWS_FT_FI10
Number of Residues	1
Details	SITE: Primary proton acceptor => ECO:0000305\|PubMed:10903866, ECO:0000305\|PubMed:10949309, ECO:0000305\|PubMed:28008064

Chain	Residue	Details
A	ASP85

site_id	SWS_FT_FI11
Number of Residues	1
Details	MOD_RES: N6-(retinylidene)lysine => ECO:0000269\|PubMed:10452895, ECO:0000269\|PubMed:10467143, ECO:0000269\|PubMed:10548112, ECO:0000269\|PubMed:10903866, ECO:0000269\|PubMed:10949307, ECO:0000269\|PubMed:10949309, ECO:0000269\|PubMed:11829498, ECO:0000269\|PubMed:28008064, ECO:0000269\|PubMed:6794028, ECO:0000269\|PubMed:9287223, ECO:0000269\|PubMed:9632391, ECO:0000269\|PubMed:9751724, ECO:0007744\|PDB:1C3W, ECO:0007744\|PDB:1F50, ECO:0007744\|PDB:1IW9, ECO:0007744\|PDB:1KG8, ECO:0007744\|PDB:1KG9, ECO:0007744\|PDB:1M0L, ECO:0007744\|PDB:1M0M, ECO:0007744\|PDB:1O0A, ECO:0007744\|PDB:1P8H, ECO:0007744\|PDB:1P8U, ECO:0007744\|PDB:1Q5J, ECO:0007744\|PDB:1QHJ, ECO:0007744\|PDB:1QKP, ECO:0007744\|PDB:1QM8, ECO:0007744\|PDB:1R2N, ECO:0007744\|PDB:1R84, ECO:0007744\|PDB:1S8J, ECO:0007744\|PDB:1TN0, ECO:0007744\|PDB:1TN5, ECO:0007744\|PDB:1UCQ, ECO:0007744\|PDB:1X0I, ECO:0007744\|PDB:1X0K, ECO:0007744\|PDB:1X0S, ECO:0007744\|PDB:1XJI, ECO:0007744\|PDB:2AT9, ECO:0007744\|PDB:2BRD, ECO:0007744\|PDB:2I1X, ECO:0007744\|PDB:2I20, ECO:0007744\|PDB:2I21, ECO:0007744\|PDB:2NTU, ECO:0007744\|PDB:2NTW, ECO:0007744\|PDB:2WJK, ECO:0007744\|PDB:2WJL, ECO:0007744\|PDB:2ZFE, ECO:0007744\|PDB:2ZZL, ECO:0007744\|PDB:3COD, ECO:0007744\|PDB:3HAN, ECO:0007744\|PDB:3HAO, ECO:0007744\|PDB:3HAP, ECO:0007744\|PDB:3HAQ, ECO:0007744\|PDB:3HAR, ECO:0007744\|PDB:3HAS, ECO:0007744\|PDB:3NS0, ECO:0007744\|PDB:3NSB, ECO:0007744\|PDB:3T45, ECO:0007744\|PDB:3UTV, ECO:0007744\|PDB:3UTW, ECO:0007744\|PDB:3UTX, ECO:0007744\|PDB:3VHZ, ECO:0007744\|PDB:3VI0, ECO:0007744\|PDB:4FPD, ECO:0007744\|PDB:4HWL, ECO:0007744\|PDB:4MD1, ECO:0007744\|PDB:4MD2, ECO:0007744\|PDB:4X31, ECO:0007744\|PDB:4X32, ECO:0007744\|PDB:5A44, ECO:0007744\|PDB:5A45, ECO:0007744\|PDB:5B34, ECO:0007744\|PDB:5B6V, ECO:0007744\|PDB:5B6W, ECO:0007744\|PDB:5B6X, ECO:0007744\|PDB:5B6Y, ECO:0007744\|PDB:5B6Z, ECO:0007744\|PDB:5BR2, ECO:0007744\|PDB:5BR5, ECO:0007744\|PDB:5H2H, ECO:0007744\|PDB:5H2I, ECO:0007744\|PDB:5H2J, ECO:0007744\|PDB:5H2K, ECO:0007744\|PDB:5H2L, ECO:0007744\|PDB:5H2M, ECO:0007744\|PDB:5H2N, ECO:0007744\|PDB:5H2O, ECO:0007744\|PDB:5H2P, ECO:0007744\|PDB:5J7A

Chain	Residue	Details
A	LYS216

224572

PDB entries from 2024-09-04

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