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4X2T

X-ray crystal structure of the orally available aminopeptidase inhibitor, Tosedostat, bound to the M17 Leucyl Aminopeptidase from P. falciparum

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006508biological_processproteolysis
A0019538biological_processprotein metabolic process
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
A0070006molecular_functionmetalloaminopeptidase activity
B0005737cellular_componentcytoplasm
B0006508biological_processproteolysis
B0019538biological_processprotein metabolic process
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
B0070006molecular_functionmetalloaminopeptidase activity
C0005737cellular_componentcytoplasm
C0006508biological_processproteolysis
C0019538biological_processprotein metabolic process
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
C0070006molecular_functionmetalloaminopeptidase activity
D0005737cellular_componentcytoplasm
D0006508biological_processproteolysis
D0019538biological_processprotein metabolic process
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
D0070006molecular_functionmetalloaminopeptidase activity
E0005737cellular_componentcytoplasm
E0006508biological_processproteolysis
E0019538biological_processprotein metabolic process
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
E0070006molecular_functionmetalloaminopeptidase activity
F0005737cellular_componentcytoplasm
F0006508biological_processproteolysis
F0019538biological_processprotein metabolic process
F0030145molecular_functionmanganese ion binding
F0046872molecular_functionmetal ion binding
F0070006molecular_functionmetalloaminopeptidase activity
G0005737cellular_componentcytoplasm
G0006508biological_processproteolysis
G0019538biological_processprotein metabolic process
G0030145molecular_functionmanganese ion binding
G0046872molecular_functionmetal ion binding
G0070006molecular_functionmetalloaminopeptidase activity
H0005737cellular_componentcytoplasm
H0006508biological_processproteolysis
H0019538biological_processprotein metabolic process
H0030145molecular_functionmanganese ion binding
H0046872molecular_functionmetal ion binding
H0070006molecular_functionmetalloaminopeptidase activity
I0005737cellular_componentcytoplasm
I0006508biological_processproteolysis
I0019538biological_processprotein metabolic process
I0030145molecular_functionmanganese ion binding
I0046872molecular_functionmetal ion binding
I0070006molecular_functionmetalloaminopeptidase activity
J0005737cellular_componentcytoplasm
J0006508biological_processproteolysis
J0019538biological_processprotein metabolic process
J0030145molecular_functionmanganese ion binding
J0046872molecular_functionmetal ion binding
J0070006molecular_functionmetalloaminopeptidase activity
K0005737cellular_componentcytoplasm
K0006508biological_processproteolysis
K0019538biological_processprotein metabolic process
K0030145molecular_functionmanganese ion binding
K0046872molecular_functionmetal ion binding
K0070006molecular_functionmetalloaminopeptidase activity
L0005737cellular_componentcytoplasm
L0006508biological_processproteolysis
L0019538biological_processprotein metabolic process
L0030145molecular_functionmanganese ion binding
L0046872molecular_functionmetal ion binding
L0070006molecular_functionmetalloaminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 701
ChainResidue
AASP379
AASP459
AGLU461
AZN702
ATOD703

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 702
ChainResidue
AZN701
ATOD703
ALYS374
AASP379
AASP399
AGLU461

site_idAC3
Number of Residues13
Detailsbinding site for residue TOD A 703
ChainResidue
ALYS374
AASP379
ALYS386
AASP459
AALA460
AGLU461
ALEU487
AGLY489
AZN701
AZN702
ACO3704
AHOH829
AHOH830

site_idAC4
Number of Residues5
Detailsbinding site for residue CO3 A 704
ChainResidue
AALA460
AGLY462
AARG463
ALEU487
ATOD703

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 A 706
ChainResidue
AASP249
ATYR292
ASER295
ALYS587
APRO588
CTYR541

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 707
ChainResidue
AILE529
AILE530
AASN531
FTYR499

site_idAC7
Number of Residues5
Detailsbinding site for residue 1PE A 708
ChainResidue
ATYR103
AASN104
AHIS108
ALYS320
ATYR411

site_idAC8
Number of Residues7
Detailsbinding site for residue CO3 B 1001
ChainResidue
BLYS374
BALA460
BGLU461
BGLY462
BARG463
BLEU487
BTOD1004

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN B 1002
ChainResidue
BASP379
BASP459
BGLU461
BZN1003
BTOD1004

site_idAD1
Number of Residues6
Detailsbinding site for residue ZN B 1003
ChainResidue
BLYS374
BASP379
BASP399
BGLU461
BZN1002
BTOD1004

site_idAD2
Number of Residues11
Detailsbinding site for residue TOD B 1004
ChainResidue
BLYS374
BASP379
BLYS386
BASP459
BGLU461
BLEU487
BGLY489
BALA490
BCO31001
BZN1002
BZN1003

site_idAD3
Number of Residues6
Detailsbinding site for residue SO4 B 1005
ChainResidue
ASER435
ALYS436
BSER435
BLYS436
CSER435
CLYS436

site_idAD4
Number of Residues4
Detailsbinding site for residue 1PE B 1006
ChainResidue
BTYR103
BHIS108
BLYS320
BTYR411

site_idAD5
Number of Residues6
Detailsbinding site for residue ZN C 701
ChainResidue
CLYS374
CASP379
CASP399
CGLU461
CZN702
CTOD703

site_idAD6
Number of Residues5
Detailsbinding site for residue ZN C 702
ChainResidue
CASP379
CASP459
CGLU461
CZN701
CTOD703

site_idAD7
Number of Residues11
Detailsbinding site for residue TOD C 703
ChainResidue
CGLU461
CLEU487
CGLY489
CZN701
CZN702
CCO3704
CLYS374
CASP379
CLYS386
CASN457
CASP459

site_idAD8
Number of Residues7
Detailsbinding site for residue CO3 C 704
ChainResidue
CLYS374
CALA460
CGLU461
CGLY462
CARG463
CLEU487
CTOD703

site_idAD9
Number of Residues3
Detailsbinding site for residue SO4 C 705
ChainResidue
CGLY126
CLEU219
CSER220

site_idAE1
Number of Residues6
Detailsbinding site for residue 1PE C 706
ChainResidue
CTYR103
CGLU316
CGLN319
CLYS320
C1PE707
CHOH852

site_idAE2
Number of Residues6
Detailsbinding site for residue 1PE C 707
ChainResidue
CTYR103
CASN104
CHIS108
CLYS320
CTYR411
C1PE706

site_idAE3
Number of Residues4
Detailsbinding site for residue ZN D 701
ChainResidue
DASP379
DASP459
DGLU461
DZN702

site_idAE4
Number of Residues5
Detailsbinding site for residue ZN D 702
ChainResidue
DLYS374
DASP379
DASP399
DGLU461
DZN701

site_idAE5
Number of Residues6
Detailsbinding site for residue CO3 D 703
ChainResidue
DLYS374
DALA460
DGLU461
DGLY462
DARG463
DLEU487

site_idAE6
Number of Residues6
Detailsbinding site for residue SO4 D 704
ChainResidue
APHE156
AASN161
DTYR176
DMET177
DPHE178
DSER184

site_idAE7
Number of Residues6
Detailsbinding site for residue 1PE D 705
ChainResidue
DTYR103
DASN104
DHIS108
DLYS320
DTYR411
D1PE706

site_idAE8
Number of Residues4
Detailsbinding site for residue 1PE D 706
ChainResidue
DTYR103
DGLU316
DLYS320
D1PE705

site_idAE9
Number of Residues6
Detailsbinding site for residue ZN E 701
ChainResidue
ELYS374
EASP379
EASP399
EGLU461
EZN702
ETOD703

site_idAF1
Number of Residues5
Detailsbinding site for residue ZN E 702
ChainResidue
EASP379
EASP459
EGLU461
EZN701
ETOD703

site_idAF2
Number of Residues12
Detailsbinding site for residue TOD E 703
ChainResidue
ELYS374
EASP379
ELYS386
EASP399
EASP459
EGLU461
ELEU487
ETHR488
EGLY489
EZN701
EZN702
ECO3704

site_idAF3
Number of Residues6
Detailsbinding site for residue CO3 E 704
ChainResidue
ELYS374
EALA460
EGLY462
EARG463
ELEU487
ETOD703

site_idAF4
Number of Residues6
Detailsbinding site for residue SO4 E 705
ChainResidue
DSER435
DLYS436
ESER435
ELYS436
FSER435
FLYS436

site_idAF5
Number of Residues4
Detailsbinding site for residue SO4 E 706
ChainResidue
CPHE156
ETYR176
EPHE178
ESER184

site_idAF6
Number of Residues5
Detailsbinding site for residue 1PE E 707
ChainResidue
ETYR103
EHIS108
EPHE289
ELEU321
ETYR411

site_idAF7
Number of Residues6
Detailsbinding site for residue ZN F 701
ChainResidue
FASP379
FLYS386
FASP459
FGLU461
FZN702
FTOD703

site_idAF8
Number of Residues6
Detailsbinding site for residue ZN F 702
ChainResidue
FLYS374
FASP379
FASP399
FGLU461
FZN701
FTOD703

site_idAF9
Number of Residues13
Detailsbinding site for residue TOD F 703
ChainResidue
FLYS374
FASP379
FLYS386
FASP459
FGLU461
FLEU487
FGLY489
FALA490
FTYR493
FZN701
FZN702
FCO3704
FHOH850

site_idAG1
Number of Residues6
Detailsbinding site for residue CO3 F 704
ChainResidue
FALA460
FGLU461
FGLY462
FARG463
FLEU487
FTOD703

site_idAG2
Number of Residues5
Detailsbinding site for residue ZN G 701
ChainResidue
GASP379
GASP459
GGLU461
GZN702
GTOD703

site_idAG3
Number of Residues8
Detailsbinding site for residue ZN G 702
ChainResidue
GLYS374
GASP379
GASP399
GGLU461
GZN701
GTOD703
GCO3704
GHOH847

site_idAG4
Number of Residues13
Detailsbinding site for residue TOD G 703
ChainResidue
GLYS374
GASP379
GLYS386
GASP459
GGLU461
GLEU487
GGLY489
GILE547
GZN701
GZN702
GCO3704
GHOH847
GHOH883

site_idAG5
Number of Residues7
Detailsbinding site for residue CO3 G 704
ChainResidue
GALA460
GGLU461
GGLY462
GARG463
GLEU487
GZN702
GTOD703

site_idAG6
Number of Residues2
Detailsbinding site for residue SO4 G 705
ChainResidue
GHOH818
GHOH893

site_idAG7
Number of Residues5
Detailsbinding site for residue SO4 G 706
ChainResidue
ALYS111
GGLY126
GSER220
GHOH891
JLYS164

site_idAG8
Number of Residues3
Detailsbinding site for residue 1PE G 707
ChainResidue
GASN104
GHIS108
GLYS320

site_idAG9
Number of Residues4
Detailsbinding site for residue 1PE G 708
ChainResidue
GTYR103
GGLU316
GGLN319
GLYS320

site_idAH1
Number of Residues7
Detailsbinding site for residue ZN H 701
ChainResidue
HLYS374
HASP379
HASP399
HGLU461
HZN702
HTOD703
HHOH840

site_idAH2
Number of Residues5
Detailsbinding site for residue ZN H 702
ChainResidue
HASP379
HASP459
HGLU461
HZN701
HTOD703

site_idAH3
Number of Residues12
Detailsbinding site for residue TOD H 703
ChainResidue
HLYS374
HASP379
HLYS386
HASP459
HALA460
HGLU461
HLEU487
HGLY489
HZN701
HZN702
HCO3704
HHOH840

site_idAH4
Number of Residues8
Detailsbinding site for residue CO3 H 704
ChainResidue
HLYS374
HASP459
HALA460
HGLU461
HGLY462
HARG463
HLEU487
HTOD703

site_idAH5
Number of Residues7
Detailsbinding site for residue 1PE H 705
ChainResidue
HTYR103
HASN104
HHIS108
HPHE289
HLYS320
HLEU321
HTYR411

site_idAH6
Number of Residues5
Detailsbinding site for residue ZN I 701
ChainResidue
IASP379
IASP459
IGLU461
IZN702
ITOD703

site_idAH7
Number of Residues8
Detailsbinding site for residue ZN I 702
ChainResidue
ILYS374
IASP379
IASP399
IGLU461
IZN701
ITOD703
ICO3704
IHOH833

site_idAH8
Number of Residues13
Detailsbinding site for residue TOD I 703
ChainResidue
ILYS374
IASP379
ILYS386
IASP459
IGLU461
IARG463
ILEU487
IGLY489
ISER554
IZN701
IZN702
ICO3704
IHOH884

site_idAH9
Number of Residues8
Detailsbinding site for residue CO3 I 704
ChainResidue
IASP459
IALA460
IGLU461
IGLY462
IARG463
ILEU487
IZN702
ITOD703

site_idAI1
Number of Residues6
Detailsbinding site for residue SO4 I 705
ChainResidue
GSER435
GLYS436
HSER435
HLYS436
ISER435
ILYS436

site_idAI2
Number of Residues5
Detailsbinding site for residue ZN J 701
ChainResidue
JASP379
JASP459
JGLU461
JZN702
JTOD703

site_idAI3
Number of Residues6
Detailsbinding site for residue ZN J 702
ChainResidue
JLYS374
JASP379
JASP399
JGLU461
JZN701
JTOD703

site_idAI4
Number of Residues11
Detailsbinding site for residue TOD J 703
ChainResidue
JLYS374
JASP379
JLYS386
JASP459
JGLU461
JLEU487
JTHR488
JGLY489
JZN701
JZN702
JCO3704

site_idAI5
Number of Residues7
Detailsbinding site for residue CO3 J 704
ChainResidue
JLYS374
JALA460
JGLU461
JGLY462
JARG463
JLEU487
JTOD703

site_idAI6
Number of Residues5
Detailsbinding site for residue ZN K 701
ChainResidue
KASP379
KASP459
KGLU461
KZN702
KTOD703

site_idAI7
Number of Residues6
Detailsbinding site for residue ZN K 702
ChainResidue
KLYS374
KASP379
KASP399
KGLU461
KZN701
KTOD703

site_idAI8
Number of Residues13
Detailsbinding site for residue TOD K 703
ChainResidue
KLYS374
KASP379
KLYS386
KASP459
KALA460
KGLU461
KLEU487
KTHR488
KGLY489
KTYR493
KZN701
KZN702
KCO3704

site_idAI9
Number of Residues6
Detailsbinding site for residue CO3 K 704
ChainResidue
KALA460
KGLU461
KGLY462
KARG463
KLEU487
KTOD703

site_idAJ1
Number of Residues5
Detailsbinding site for residue ZN L 701
ChainResidue
LASP379
LASP459
LGLU461
LZN702
LTOD703

site_idAJ2
Number of Residues6
Detailsbinding site for residue ZN L 702
ChainResidue
LLYS374
LASP379
LASP399
LGLU461
LZN701
LTOD703

site_idAJ3
Number of Residues11
Detailsbinding site for residue TOD L 703
ChainResidue
LLYS374
LASP379
LLYS386
LASP459
LGLU461
LLEU487
LTHR488
LGLY489
LZN701
LZN702
LCO3704

site_idAJ4
Number of Residues7
Detailsbinding site for residue CO3 L 704
ChainResidue
LLYS374
LALA460
LGLU461
LGLY462
LARG463
LLEU487
LTOD703

site_idAJ5
Number of Residues6
Detailsbinding site for residue SO4 L 705
ChainResidue
JSER435
JLYS436
KSER435
KLYS436
LSER435
LLYS436

site_idAJ6
Number of Residues10
Detailsbinding site for Di-peptide LYS G 512 and ASP G 603
ChainResidue
GGLU508
GLEU509
GILE510
GASN511
GILE513
GLEU514
GGLN515
GSER516
GLEU601
GASN602

Functional Information from PROSITE/UniProt
site_idPS00631
Number of Residues8
DetailsCYTOSOL_AP Cytosol aminopeptidase signature. NTDAEGRL
ChainResidueDetails
AASN457-LEU464

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:P00727
ChainResidueDetails
ALYS386
EARG463
FLYS386
FARG463
GLYS386
GARG463
HLYS386
HARG463
ILYS386
IARG463
JLYS386
AARG463
JARG463
KLYS386
KARG463
LLYS386
LARG463
BLYS386
BARG463
CLYS386
CARG463
DLYS386
DARG463
ELYS386

site_idSWS_FT_FI2
Number of Residues36
DetailsBINDING: BINDING => ECO:0000269|PubMed:20133789, ECO:0000269|PubMed:21844374, ECO:0000269|PubMed:23713488, ECO:0000269|PubMed:25299353, ECO:0000269|PubMed:25645579, ECO:0000269|PubMed:35691342, ECO:0000269|Ref.13, ECO:0000312|PDB:3T8W, ECO:0007744|PDB:3KQX, ECO:0007744|PDB:3KQZ, ECO:0007744|PDB:3KR4, ECO:0007744|PDB:3KR5, ECO:0007744|PDB:4K3N, ECO:0007744|PDB:4R6T, ECO:0007744|PDB:4R76, ECO:0007744|PDB:4R7M, ECO:0007744|PDB:4X2T, ECO:0007744|PDB:7RIE, ECO:0007744|PDB:7T3V
ChainResidueDetails
ALYS374
DLYS374
DASP379
DGLU461
ELYS374
EASP379
EGLU461
FLYS374
FASP379
FGLU461
GLYS374
AASP379
GASP379
GGLU461
HLYS374
HASP379
HGLU461
ILYS374
IASP379
IGLU461
JLYS374
JASP379
AGLU461
JGLU461
KLYS374
KASP379
KGLU461
LLYS374
LASP379
LGLU461
BLYS374
BASP379
BGLU461
CLYS374
CASP379
CGLU461

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305|PubMed:20133789, ECO:0000305|PubMed:23713488, ECO:0007744|PDB:3KR5, ECO:0007744|PDB:4K3N
ChainResidueDetails
ALYS386
JLYS386
KLYS386
LLYS386
BLYS386
CLYS386
DLYS386
ELYS386
FLYS386
GLYS386
HLYS386
ILYS386

site_idSWS_FT_FI4
Number of Residues36
DetailsBINDING: BINDING => ECO:0000269|PubMed:35691342, ECO:0007744|PDB:7SRV
ChainResidueDetails
AASP394
DASP394
DMET396
DASP399
EASP394
EMET396
EASP399
FASP394
FMET396
FASP399
GASP394
AMET396
GMET396
GASP399
HASP394
HMET396
HASP399
IASP394
IMET396
IASP399
JASP394
JMET396
AASP399
JASP399
KASP394
KMET396
KASP399
LASP394
LMET396
LASP399
BASP394
BMET396
BASP399
CASP394
CMET396
CASP399

site_idSWS_FT_FI5
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:20133789, ECO:0000269|PubMed:21844374, ECO:0000269|PubMed:23713488, ECO:0000269|PubMed:25299353, ECO:0000269|PubMed:25645579, ECO:0000269|PubMed:35691342, ECO:0000269|Ref.13, ECO:0000312|PDB:3KQZ, ECO:0000312|PDB:3T8W, ECO:0007744|PDB:3KR4, ECO:0007744|PDB:3KR5, ECO:0007744|PDB:4K3N, ECO:0007744|PDB:4R6T, ECO:0007744|PDB:4R76, ECO:0007744|PDB:4R7M, ECO:0007744|PDB:4X2T, ECO:0007744|PDB:7RIE, ECO:0007744|PDB:7T3V
ChainResidueDetails
AASP459
JASP459
KASP459
LASP459
BASP459
CASP459
DASP459
EASP459
FASP459
GASP459
HASP459
IASP459

site_idSWS_FT_FI6
Number of Residues12
DetailsSITE: Essential for hexamer stabilization => ECO:0000269|PubMed:35691342
ChainResidueDetails
ALYS386
JLYS386
KLYS386
LLYS386
BLYS386
CLYS386
DLYS386
ELYS386
FLYS386
GLYS386
HLYS386
ILYS386

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PDB entries from 2024-07-10

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