4X2Q

Crystal Structure of Human Aldehyde Dehydrogenase, ALDH1a2

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0001568	biological_process	blood vessel development
A	0001756	biological_process	somitogenesis
A	0001758	molecular_function	retinal dehydrogenase (NAD+) activity
A	0001822	biological_process	kidney development
A	0001889	biological_process	liver development
A	0002138	biological_process	retinoic acid biosynthetic process
A	0003007	biological_process	heart morphogenesis
A	0004028	molecular_function	3-chloroallyl aldehyde dehydrogenase activity
A	0004029	molecular_function	aldehyde dehydrogenase (NAD+) activity
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006081	biological_process	aldehyde metabolic process
A	0006629	biological_process	lipid metabolic process
A	0006776	biological_process	vitamin A metabolic process
A	0007494	biological_process	midgut development
A	0008283	biological_process	cell population proliferation
A	0008284	biological_process	positive regulation of cell population proliferation
A	0008285	biological_process	negative regulation of cell population proliferation
A	0009855	biological_process	determination of bilateral symmetry
A	0009952	biological_process	anterior/posterior pattern specification
A	0009954	biological_process	proximal/distal pattern formation
A	0010628	biological_process	positive regulation of gene expression
A	0014032	biological_process	neural crest cell development
A	0016331	biological_process	morphogenesis of embryonic epithelium
A	0016491	molecular_function	oxidoreductase activity
A	0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A	0016918	molecular_function	retinal binding
A	0021915	biological_process	neural tube development
A	0021983	biological_process	pituitary gland development
A	0030182	biological_process	neuron differentiation
A	0030324	biological_process	lung development
A	0030326	biological_process	embryonic limb morphogenesis
A	0030900	biological_process	forebrain development
A	0030902	biological_process	hindbrain development
A	0031016	biological_process	pancreas development
A	0031076	biological_process	embryonic camera-type eye development
A	0032355	biological_process	response to estradiol
A	0032526	biological_process	response to retinoic acid
A	0033189	biological_process	response to vitamin A
A	0034097	biological_process	response to cytokine
A	0035115	biological_process	embryonic forelimb morphogenesis
A	0035799	biological_process	ureter maturation
A	0042572	biological_process	retinol metabolic process
A	0042573	biological_process	retinoic acid metabolic process
A	0042574	biological_process	retinal metabolic process
A	0042904	biological_process	9-cis-retinoic acid biosynthetic process
A	0043010	biological_process	camera-type eye development
A	0043065	biological_process	positive regulation of apoptotic process
A	0048384	biological_process	retinoic acid receptor signaling pathway
A	0048471	cellular_component	perinuclear region of cytoplasm
A	0048566	biological_process	embryonic digestive tract development
A	0048738	biological_process	cardiac muscle tissue development
A	0051289	biological_process	protein homotetramerization
A	0060324	biological_process	face development
A	0071300	biological_process	cellular response to retinoic acid
A	1905562	biological_process	regulation of vascular endothelial cell proliferation
B	0001568	biological_process	blood vessel development
B	0001756	biological_process	somitogenesis
B	0001758	molecular_function	retinal dehydrogenase (NAD+) activity
B	0001822	biological_process	kidney development
B	0001889	biological_process	liver development
B	0002138	biological_process	retinoic acid biosynthetic process
B	0003007	biological_process	heart morphogenesis
B	0004028	molecular_function	3-chloroallyl aldehyde dehydrogenase activity
B	0004029	molecular_function	aldehyde dehydrogenase (NAD+) activity
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0006081	biological_process	aldehyde metabolic process
B	0006629	biological_process	lipid metabolic process
B	0006776	biological_process	vitamin A metabolic process
B	0007494	biological_process	midgut development
B	0008283	biological_process	cell population proliferation
B	0008284	biological_process	positive regulation of cell population proliferation
B	0008285	biological_process	negative regulation of cell population proliferation
B	0009855	biological_process	determination of bilateral symmetry
B	0009952	biological_process	anterior/posterior pattern specification
B	0009954	biological_process	proximal/distal pattern formation
B	0010628	biological_process	positive regulation of gene expression
B	0014032	biological_process	neural crest cell development
B	0016331	biological_process	morphogenesis of embryonic epithelium
B	0016491	molecular_function	oxidoreductase activity
B	0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B	0016918	molecular_function	retinal binding
B	0021915	biological_process	neural tube development
B	0021983	biological_process	pituitary gland development
B	0030182	biological_process	neuron differentiation
B	0030324	biological_process	lung development
B	0030326	biological_process	embryonic limb morphogenesis
B	0030900	biological_process	forebrain development
B	0030902	biological_process	hindbrain development
B	0031016	biological_process	pancreas development
B	0031076	biological_process	embryonic camera-type eye development
B	0032355	biological_process	response to estradiol
B	0032526	biological_process	response to retinoic acid
B	0033189	biological_process	response to vitamin A
B	0034097	biological_process	response to cytokine
B	0035115	biological_process	embryonic forelimb morphogenesis
B	0035799	biological_process	ureter maturation
B	0042572	biological_process	retinol metabolic process
B	0042573	biological_process	retinoic acid metabolic process
B	0042574	biological_process	retinal metabolic process
B	0042904	biological_process	9-cis-retinoic acid biosynthetic process
B	0043010	biological_process	camera-type eye development
B	0043065	biological_process	positive regulation of apoptotic process
B	0048384	biological_process	retinoic acid receptor signaling pathway
B	0048471	cellular_component	perinuclear region of cytoplasm
B	0048566	biological_process	embryonic digestive tract development
B	0048738	biological_process	cardiac muscle tissue development
B	0051289	biological_process	protein homotetramerization
B	0060324	biological_process	face development
B	0071300	biological_process	cellular response to retinoic acid
B	1905562	biological_process	regulation of vascular endothelial cell proliferation
C	0001568	biological_process	blood vessel development
C	0001756	biological_process	somitogenesis
C	0001758	molecular_function	retinal dehydrogenase (NAD+) activity
C	0001822	biological_process	kidney development
C	0001889	biological_process	liver development
C	0002138	biological_process	retinoic acid biosynthetic process
C	0003007	biological_process	heart morphogenesis
C	0004028	molecular_function	3-chloroallyl aldehyde dehydrogenase activity
C	0004029	molecular_function	aldehyde dehydrogenase (NAD+) activity
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0006081	biological_process	aldehyde metabolic process
C	0006629	biological_process	lipid metabolic process
C	0006776	biological_process	vitamin A metabolic process
C	0007494	biological_process	midgut development
C	0008283	biological_process	cell population proliferation
C	0008284	biological_process	positive regulation of cell population proliferation
C	0008285	biological_process	negative regulation of cell population proliferation
C	0009855	biological_process	determination of bilateral symmetry
C	0009952	biological_process	anterior/posterior pattern specification
C	0009954	biological_process	proximal/distal pattern formation
C	0010628	biological_process	positive regulation of gene expression
C	0014032	biological_process	neural crest cell development
C	0016331	biological_process	morphogenesis of embryonic epithelium
C	0016491	molecular_function	oxidoreductase activity
C	0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
C	0016918	molecular_function	retinal binding
C	0021915	biological_process	neural tube development
C	0021983	biological_process	pituitary gland development
C	0030182	biological_process	neuron differentiation
C	0030324	biological_process	lung development
C	0030326	biological_process	embryonic limb morphogenesis
C	0030900	biological_process	forebrain development
C	0030902	biological_process	hindbrain development
C	0031016	biological_process	pancreas development
C	0031076	biological_process	embryonic camera-type eye development
C	0032355	biological_process	response to estradiol
C	0032526	biological_process	response to retinoic acid
C	0033189	biological_process	response to vitamin A
C	0034097	biological_process	response to cytokine
C	0035115	biological_process	embryonic forelimb morphogenesis
C	0035799	biological_process	ureter maturation
C	0042572	biological_process	retinol metabolic process
C	0042573	biological_process	retinoic acid metabolic process
C	0042574	biological_process	retinal metabolic process
C	0042904	biological_process	9-cis-retinoic acid biosynthetic process
C	0043010	biological_process	camera-type eye development
C	0043065	biological_process	positive regulation of apoptotic process
C	0048384	biological_process	retinoic acid receptor signaling pathway
C	0048471	cellular_component	perinuclear region of cytoplasm
C	0048566	biological_process	embryonic digestive tract development
C	0048738	biological_process	cardiac muscle tissue development
C	0051289	biological_process	protein homotetramerization
C	0060324	biological_process	face development
C	0071300	biological_process	cellular response to retinoic acid
C	1905562	biological_process	regulation of vascular endothelial cell proliferation
D	0001568	biological_process	blood vessel development
D	0001756	biological_process	somitogenesis
D	0001758	molecular_function	retinal dehydrogenase (NAD+) activity
D	0001822	biological_process	kidney development
D	0001889	biological_process	liver development
D	0002138	biological_process	retinoic acid biosynthetic process
D	0003007	biological_process	heart morphogenesis
D	0004028	molecular_function	3-chloroallyl aldehyde dehydrogenase activity
D	0004029	molecular_function	aldehyde dehydrogenase (NAD+) activity
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0006081	biological_process	aldehyde metabolic process
D	0006629	biological_process	lipid metabolic process
D	0006776	biological_process	vitamin A metabolic process
D	0007494	biological_process	midgut development
D	0008283	biological_process	cell population proliferation
D	0008284	biological_process	positive regulation of cell population proliferation
D	0008285	biological_process	negative regulation of cell population proliferation
D	0009855	biological_process	determination of bilateral symmetry
D	0009952	biological_process	anterior/posterior pattern specification
D	0009954	biological_process	proximal/distal pattern formation
D	0010628	biological_process	positive regulation of gene expression
D	0014032	biological_process	neural crest cell development
D	0016331	biological_process	morphogenesis of embryonic epithelium
D	0016491	molecular_function	oxidoreductase activity
D	0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
D	0016918	molecular_function	retinal binding
D	0021915	biological_process	neural tube development
D	0021983	biological_process	pituitary gland development
D	0030182	biological_process	neuron differentiation
D	0030324	biological_process	lung development
D	0030326	biological_process	embryonic limb morphogenesis
D	0030900	biological_process	forebrain development
D	0030902	biological_process	hindbrain development
D	0031016	biological_process	pancreas development
D	0031076	biological_process	embryonic camera-type eye development
D	0032355	biological_process	response to estradiol
D	0032526	biological_process	response to retinoic acid
D	0033189	biological_process	response to vitamin A
D	0034097	biological_process	response to cytokine
D	0035115	biological_process	embryonic forelimb morphogenesis
D	0035799	biological_process	ureter maturation
D	0042572	biological_process	retinol metabolic process
D	0042573	biological_process	retinoic acid metabolic process
D	0042574	biological_process	retinal metabolic process
D	0042904	biological_process	9-cis-retinoic acid biosynthetic process
D	0043010	biological_process	camera-type eye development
D	0043065	biological_process	positive regulation of apoptotic process
D	0048384	biological_process	retinoic acid receptor signaling pathway
D	0048471	cellular_component	perinuclear region of cytoplasm
D	0048566	biological_process	embryonic digestive tract development
D	0048738	biological_process	cardiac muscle tissue development
D	0051289	biological_process	protein homotetramerization
D	0060324	biological_process	face development
D	0071300	biological_process	cellular response to retinoic acid
D	1905562	biological_process	regulation of vascular endothelial cell proliferation

Functional Information from PDB Data

site_id	AC1
Number of Residues	14
Details	binding site for residue NAD A 5001

Chain	Residue
A	ILE165
A	ALA230
A	PHE243
A	SER246
A	VAL249
A	ILE253
A	ILE166
A	TRP168
A	LYS192
A	ALA194
A	GLU195
A	TYR224
A	GLY225
A	GLY229

---

site_id	AC2
Number of Residues	13
Details	binding site for residue NAD B 601

Chain	Residue
B	ILE165
B	ILE166
B	TRP168
B	LYS192
B	ALA194
B	GLU195
B	GLY225
B	GLY229
B	ALA230
B	PHE243
B	SER246
B	VAL249
B	ILE253

---

site_id	AC3
Number of Residues	14
Details	binding site for residue NAD C 601

Chain	Residue
C	ILE165
C	ILE166
C	TRP168
C	LYS192
C	ALA194
C	GLU195
C	GLY225
C	PRO226
C	GLY229
C	ALA230
C	PHE243
C	SER246
C	VAL249
C	ILE253

---

site_id	AC4
Number of Residues	13
Details	binding site for residue NAD D 601

Chain	Residue
D	ILE165
D	ILE166
D	TRP168
D	LYS192
D	ALA194
D	GLU195
D	GLY225
D	GLY229
D	ALA230
D	PHE243
D	SER246
D	VAL249
D	ILE253

---

Functional Information from PROSITE/UniProt

site_id	PS00070
Number of Residues	12
Details	ALDEHYDE_DEHYDR_CYS Aldehyde dehydrogenases cysteine active site. FfNQGQCCTAGS

Chain	Residue	Details
A	PHE295-SER306

---

site_id	PS00687
Number of Residues	8
Details	ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. LELGGKSP

Chain	Residue	Details
A	LEU267-PRO274

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10007","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10008","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	Active site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU10007","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10008","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"29240402","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	20
Details	Binding site: {"evidences":[{"source":"PubMed","id":"29240402","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4X2Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6ALJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6B5G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6B5H","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	28
Details	Binding site: {"evidences":[{"source":"PubMed","id":"29240402","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6ALJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6B5G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6B5H","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Site: {"description":"Transition state stabilizer","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	Modified residue: {"description":"Phosphotyrosine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---