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4WZB

Crystal Structure of MgAMPPCP-bound Av2-Av1 complex

Replaces:  2AFK
Functional Information from GO Data
ChainGOidnamespacecontents
A0005524molecular_functionATP binding
A0009399biological_processnitrogen fixation
A0016163molecular_functionnitrogenase activity
A0016491molecular_functionoxidoreductase activity
A0016612cellular_componentmolybdenum-iron nitrogenase complex
A0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
B0005524molecular_functionATP binding
B0009399biological_processnitrogen fixation
B0016163molecular_functionnitrogenase activity
B0016491molecular_functionoxidoreductase activity
B0016612cellular_componentmolybdenum-iron nitrogenase complex
B0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
B0046872molecular_functionmetal ion binding
B0051536molecular_functioniron-sulfur cluster binding
C0005524molecular_functionATP binding
C0009399biological_processnitrogen fixation
C0016163molecular_functionnitrogenase activity
C0016491molecular_functionoxidoreductase activity
C0016612cellular_componentmolybdenum-iron nitrogenase complex
C0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
C0046872molecular_functionmetal ion binding
C0051536molecular_functioniron-sulfur cluster binding
D0005524molecular_functionATP binding
D0009399biological_processnitrogen fixation
D0016163molecular_functionnitrogenase activity
D0016491molecular_functionoxidoreductase activity
D0016612cellular_componentmolybdenum-iron nitrogenase complex
D0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
D0046872molecular_functionmetal ion binding
D0051536molecular_functioniron-sulfur cluster binding
E0005524molecular_functionATP binding
E0009399biological_processnitrogen fixation
E0016163molecular_functionnitrogenase activity
E0016491molecular_functionoxidoreductase activity
E0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
E0046872molecular_functionmetal ion binding
E0051539molecular_function4 iron, 4 sulfur cluster binding
F0005524molecular_functionATP binding
F0009399biological_processnitrogen fixation
F0016163molecular_functionnitrogenase activity
F0016491molecular_functionoxidoreductase activity
F0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
F0046872molecular_functionmetal ion binding
F0051539molecular_function4 iron, 4 sulfur cluster binding
G0005524molecular_functionATP binding
G0009399biological_processnitrogen fixation
G0016163molecular_functionnitrogenase activity
G0016491molecular_functionoxidoreductase activity
G0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
G0046872molecular_functionmetal ion binding
G0051539molecular_function4 iron, 4 sulfur cluster binding
H0005524molecular_functionATP binding
H0009399biological_processnitrogen fixation
H0016163molecular_functionnitrogenase activity
H0016491molecular_functionoxidoreductase activity
H0018697molecular_functionobsolete carbonyl sulfide nitrogenase activity
H0046872molecular_functionmetal ion binding
H0051539molecular_function4 iron, 4 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue HCA A 1494
ChainResidue
AALA65
BHOH1602
AGLN191
AGLY424
AILE425
AHIS442
AICS1496
AHOH1510
AHOH1543
AHOH1581

site_idAC2
Number of Residues12
Detailsbinding site for residue ICS A 1496
ChainResidue
AARG96
AHIS195
ATYR229
ACYS275
AILE355
AGLY356
AGLY357
ALEU358
AARG359
APHE381
AHIS442
AHCA1494

site_idAC3
Number of Residues15
Detailsbinding site for residue CLF A 1498
ChainResidue
ACYS62
ATYR64
APRO85
AGLY87
ACYS88
ATYR91
ACYS154
AGLY185
BCYS70
BPRO72
BSER92
BCYS95
BTYR98
BCYS153
BSER188

site_idAC4
Number of Residues6
Detailsbinding site for residue FE2 B 1492
ChainResidue
BASP353
BASP357
BHOH1517
DARG108
DGLU109
DHOH1518

site_idAC5
Number of Residues9
Detailsbinding site for residue HCA C 1494
ChainResidue
CALA65
CGLN191
CILE425
CHIS442
CICS1496
CHOH1573
CHOH1579
CHOH1614
CHOH1617

site_idAC6
Number of Residues12
Detailsbinding site for residue ICS C 1496
ChainResidue
CVAL70
CARG96
CHIS195
CTYR229
CCYS275
CGLY356
CGLY357
CLEU358
CARG359
CPHE381
CHIS442
CHCA1494

site_idAC7
Number of Residues14
Detailsbinding site for residue CLF C 1498
ChainResidue
CCYS62
CTYR64
CPRO85
CGLY87
CCYS88
CCYS154
CGLY185
DCYS70
DPRO72
DSER92
DCYS95
DTYR98
DCYS153
DSER188

site_idAC8
Number of Residues6
Detailsbinding site for residue FE2 D 1492
ChainResidue
BARG108
BGLU109
BHOH1516
DASP353
DASP357
DHOH1517

site_idAC9
Number of Residues5
Detailsbinding site for residue MG E 1291
ChainResidue
ESER16
EACP1292
EHOH1302
EHOH1322
EHOH1323

site_idAD1
Number of Residues23
Detailsbinding site for residue ACP E 1292
ChainResidue
EPRO212
EARG213
EASP214
EVAL217
EGLN218
EGLU221
EGLN236
EMG1291
EHOH1302
EHOH1323
FLYS10
FASP129
FMET156
EGLY11
EGLY12
EILE13
EGLY14
ELYS15
ESER16
ETHR17
EASP39
ELYS41
EASN185

site_idAD2
Number of Residues7
Detailsbinding site for residue SF4 E 1290
ChainResidue
ECYS97
EGLY99
ECYS132
FCYS97
FALA98
FGLY99
FCYS132

site_idAD3
Number of Residues6
Detailsbinding site for residue MG F 1291
ChainResidue
FSER16
FASP125
FACP1292
FHOH1304
FHOH1305
FHOH1306

site_idAD4
Number of Residues22
Detailsbinding site for residue ACP F 1292
ChainResidue
ELYS10
EASP129
EMET156
FGLY11
FGLY12
FILE13
FGLY14
FLYS15
FSER16
FTHR17
FLYS41
FGLY128
FASN185
FPRO212
FARG213
FASP214
FVAL217
FGLN218
FGLU221
FMG1291
FHOH1304
FHOH1306

site_idAD5
Number of Residues6
Detailsbinding site for residue MG G 1291
ChainResidue
GLYS15
GSER16
GACP1290
GHOH1312
GHOH1313
GHOH1354

site_idAD6
Number of Residues6
Detailsbinding site for residue SF4 G 1292
ChainResidue
GCYS97
GGLY99
GCYS132
HCYS97
HGLY99
HCYS132

site_idAD7
Number of Residues21
Detailsbinding site for residue ACP G 1290
ChainResidue
GGLY11
GGLY12
GILE13
GGLY14
GLYS15
GSER16
GTHR17
GASP39
GLYS41
GASN185
GPRO212
GARG213
GASP214
GVAL217
GGLN218
GGLN236
GMG1291
GHOH1312
GHOH1313
GHOH1325
HLYS10

site_idAD8
Number of Residues6
Detailsbinding site for residue MG H 1291
ChainResidue
HLYS15
HSER16
HACP1292
HHOH1307
HHOH1308
HHOH1362

site_idAD9
Number of Residues24
Detailsbinding site for residue ACP H 1292
ChainResidue
GLYS10
GGLU154
GMET155
HGLY11
HGLY12
HILE13
HGLY14
HLYS15
HSER16
HTHR17
HASP39
HLYS41
HGLY128
HASN185
HPRO212
HARG213
HASP214
HVAL217
HGLN218
HGLU221
HGLN236
HMG1291
HHOH1307
HHOH1308

Functional Information from PROSITE/UniProt
site_idPS00090
Number of Residues15
DetailsNITROGENASE_1_2 Nitrogenases component 1 alpha and beta subunits signature 2. SECpigliGDDIeSV
ChainResidueDetails
ASER152-VAL166
BTHR151-PHE165

site_idPS00692
Number of Residues14
DetailsNIFH_FRXC_2 NifH/frxC family signature 2. DvLGDVVCGGFAmP
ChainResidueDetails
EASP125-PRO138

site_idPS00699
Number of Residues8
DetailsNITROGENASE_1_1 Nitrogenases component 1 alpha and beta subunits signature 1. ISHGPVGC
ChainResidueDetails
AILE81-CYS88
BTYR88-CYS95

site_idPS00746
Number of Residues13
DetailsNIFH_FRXC_1 NifH/frxC family signature 1. EsGGPepGvGCAG
ChainResidueDetails
EGLU87-GLY99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING:
ChainResidueDetails
EGLY9
HGLY9
HCYS97
HCYS132
ECYS97
ECYS132
FGLY9
FCYS97
FCYS132
GGLY9
GCYS97
GCYS132

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: ADP-ribosylarginine; by dinitrogenase reductase ADP-ribosyltransferase => ECO:0000250
ChainResidueDetails
EARG100
FARG100
GARG100
HARG100

Catalytic Information from CSA
site_idMCSA1
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
ELYS10electrostatic stabiliser, hydrogen bond donor
ELYS15electrostatic stabiliser, hydrogen bond donor
ELYS41electrostatic stabiliser, hydrogen bond donor
EASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA2
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
FLYS10electrostatic stabiliser, hydrogen bond donor
FLYS15electrostatic stabiliser, hydrogen bond donor
FLYS41electrostatic stabiliser, hydrogen bond donor
FASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA3
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
GLYS10electrostatic stabiliser, hydrogen bond donor
GLYS15electrostatic stabiliser, hydrogen bond donor
GLYS41electrostatic stabiliser, hydrogen bond donor
GASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

site_idMCSA4
Number of Residues4
DetailsM-CSA 212
ChainResidueDetails
HLYS10electrostatic stabiliser, hydrogen bond donor
HLYS15electrostatic stabiliser, hydrogen bond donor
HLYS41electrostatic stabiliser, hydrogen bond donor
HASP129hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor

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PDB entries from 2024-07-31

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