Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4WYG

Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis complexed with a fragment hit

Functional Information from GO Data
ChainGOidnamespacecontents
A0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
A0005737cellular_componentcytoplasm
A0008483molecular_functiontransaminase activity
A0009102biological_processbiotin biosynthetic process
A0030170molecular_functionpyridoxal phosphate binding
B0004015molecular_functionadenosylmethionine-8-amino-7-oxononanoate transaminase activity
B0005737cellular_componentcytoplasm
B0008483molecular_functiontransaminase activity
B0009102biological_processbiotin biosynthetic process
B0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue PLP A 501
ChainResidue
ATRP65
ALYS283
A3W1503
AHOH706
AHOH721
AHOH736
AHOH745
BGLY316
BPRO317
BTHR318
AGLY124
ASER125
ATYR157
AHIS158
AGLU220
AASP254
AILE256
AALA257

site_idAC2
Number of Residues10
Detailsbinding site for residue EPE A 502
ChainResidue
ATYR25
ASER27
AGLU31
ATRP64
AARG400
A3W1503
AHOH740
AHOH807
BGLY93
BGLY94

site_idAC3
Number of Residues13
Detailsbinding site for residue 3W1 A 503
ChainResidue
ATYR25
ATRP64
ATRP65
ATYR157
AALA226
AARG400
APHE402
APLP501
AEPE502
AHOH703
AHOH737
BGLY316
BTHR318

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 504
ChainResidue
AVAL222
AHIS232
AHOH878
AHOH996

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 505
ChainResidue
AARG193
AARG230
APHE231
AARG369
AHOH608
AHOH805
AHOH906
AHOH1024

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO A 506
ChainResidue
AARG344
AILE413
ACYS414
ATHR415
APRO416
AHOH827
AHOH974

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 507
ChainResidue
AALA113
AGLY273
ASER275
AHOH653
AHOH788

site_idAC8
Number of Residues12
Detailsbinding site for residue EPE B 502
ChainResidue
AGLY93
AGLY94
BPRO24
BTYR25
BSER27
BGLU31
BTRP64
BLEU385
BARG400
B3W1503
BHOH724
BHOH795

site_idAC9
Number of Residues13
Detailsbinding site for residue 3W1 B 503
ChainResidue
AGLY316
ATHR318
BTYR25
BTRP64
BTRP65
BTYR157
BALA226
BARG400
BPHE402
BPLP501
BEPE502
BHOH672
BHOH712

site_idAD1
Number of Residues2
Detailsbinding site for residue EDO B 504
ChainResidue
BTRP45
BGLU56

site_idAD2
Number of Residues8
Detailsbinding site for residue EDO B 505
ChainResidue
BHOH630
AALA211
AGLY212
AHOH616
AHOH624
BARG154
BHIS171
BHOH611

site_idAD3
Number of Residues11
Detailsbinding site for residue 3W1 B 506
ChainResidue
BARG193
BVAL222
BPHE231
BHIS232
BASP233
BPRO234
BHIS271
BHOH846
BHOH847
BHOH860
BHOH943

site_idAD4
Number of Residues9
Detailsbinding site for residue EDO B 507
ChainResidue
BHIS23
BGLU31
BVAL33
BSER34
BPRO35
BEDO508
BHOH710
BHOH802
BHOH962

site_idAD5
Number of Residues9
Detailsbinding site for residue EDO B 508
ChainResidue
BASP17
BGLY18
BLEU21
BHIS23
BILE28
BPRO35
BEDO507
BHOH869
BHOH961

site_idAD6
Number of Residues8
Detailsbinding site for residue EDO B 509
ChainResidue
ALEU144
BARG154
BGLN185
BVAL186
BPHE187
BHOH601
BHOH605
BHOH649

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO B 510
ChainResidue
AHIS271
AALA272
BARG246
BEDO511
BHOH606

site_idAD8
Number of Residues4
Detailsbinding site for residue EDO B 511
ChainResidue
BARG246
BTYR247
BEDO510
BHOH603

site_idAD9
Number of Residues25
Detailsbinding site for Di-peptide PLP B 501 and LYS B 283
ChainResidue
AGLY316
APRO317
ATHR318
APHE319
BTRP64
BTRP65
BGLY124
BSER125
BTYR157
BHIS158
BGLU220
BASP254
BILE256
BALA257
BGLY282
BALA284
BLEU285
BTHR286
B3W1503
BHOH698
BHOH702
BHOH716
BHOH758
BHOH762
BHOH861

Functional Information from PROSITE/UniProt
site_idPS00600
Number of Residues38
DetailsAA_TRANSFER_CLASS_3 Aminotransferases class-III pyridoxal-phosphate attachment site. LIfDEIat.GFgRtGalfaadhagvsp....DIMcvGKaltGG
ChainResidueDetails
ALEU251-GLY288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:20565114
ChainResidueDetails
ATRP64
ATYR157
AGLY316
BTRP64
BTYR157
BGLY316

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00834
ChainResidueDetails
AGLY124
AASP254
ALYS283
APRO317
BGLY124
BASP254
BLYS283
BPRO317

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:20565114
ChainResidueDetails
AARG400
BARG400

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Participates in the substrate recognition with KAPA and in a stacking interaction with the adenine ring of SAM => ECO:0000305|PubMed:20565114
ChainResidueDetails
ATYR25
BTYR25

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000269|PubMed:20565114, ECO:0007744|PDB:3BV0, ECO:0007744|PDB:3LV2
ChainResidueDetails
ALYS283
BLYS283

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon