Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

4WUD

N-terminal 43 kDa fragment of the E. coli DNA gyrase B subunit grown from no salt condition

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
A0005524molecular_functionATP binding
A0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue ANP A 401
ChainResidue
ATYR5
AGLY101
AGLY102
ALYS103
ATYR109
AGLY114
ALEU115
AHIS116
AGLY117
AVAL118
AGLY119
AILE10
AVAL120
AGLN335
ALYS337
AMG402
AHOH535
AHOH536
AHOH537
AHOH540
AHOH544
AHOH545
AGLU42
AASN46
AGLU50
AASP73
AILE78
AILE94
AALA100

site_idAC2
Number of Residues4
Detailsbinding site for residue MG A 402
ChainResidue
AASN46
AANP401
AHOH536
AHOH537

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 403
ChainResidue
ALYS103
AASP105
AHOH527
AHOH528
AHOH569
AHOH609

site_idAC4
Number of Residues4
Detailsbinding site for residue CL A 404
ChainResidue
AASP6
ASER7
AGLY81
AARG136

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor (ATPase activity)","evidences":[{"source":"PubMed","id":"10734094","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"8248233","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25202966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25849408","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10734094","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues9
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10734094","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25202966","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25849408","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"25849408","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"10734094","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"25849408","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"source":"PubMed","id":"9657678","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon