4WSJ
Crystal structure of a bacterial fucodiase in complex with 1-((1R,2R,3R,4R,5R,6R)-2,3,4-trihydroxy-5-methyl-7-azabicyclo[4.1.0]heptan-7-yl)ethan-1-one
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004560 | molecular_function | alpha-L-fucosidase activity |
A | 0005764 | cellular_component | lysosome |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0006004 | biological_process | fucose metabolic process |
A | 0016139 | biological_process | glycoside catabolic process |
A | 0016787 | molecular_function | hydrolase activity |
B | 0004560 | molecular_function | alpha-L-fucosidase activity |
B | 0005764 | cellular_component | lysosome |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0006004 | biological_process | fucose metabolic process |
B | 0016139 | biological_process | glycoside catabolic process |
B | 0016787 | molecular_function | hydrolase activity |
C | 0004560 | molecular_function | alpha-L-fucosidase activity |
C | 0005764 | cellular_component | lysosome |
C | 0005975 | biological_process | carbohydrate metabolic process |
C | 0006004 | biological_process | fucose metabolic process |
C | 0016139 | biological_process | glycoside catabolic process |
C | 0016787 | molecular_function | hydrolase activity |
D | 0004560 | molecular_function | alpha-L-fucosidase activity |
D | 0005764 | cellular_component | lysosome |
D | 0005975 | biological_process | carbohydrate metabolic process |
D | 0006004 | biological_process | fucose metabolic process |
D | 0016139 | biological_process | glycoside catabolic process |
D | 0016787 | molecular_function | hydrolase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 501 |
Chain | Residue |
A | ARG262 |
A | ARG271 |
A | HIS272 |
A | HOH734 |
A | HOH645 |
A | HOH902 |
site_id | AC2 |
Number of Residues | 2 |
Details | binding site for residue SO4 A 502 |
Chain | Residue |
A | LYS196 |
A | HOH696 |
site_id | AC3 |
Number of Residues | 11 |
Details | binding site for residue 3U3 A 503 |
Chain | Residue |
A | GLU87 |
A | TRP88 |
A | HIS135 |
A | HIS136 |
A | TYR178 |
A | ASP229 |
A | ARG262 |
A | HOH734 |
A | HOH932 |
A | HOH660 |
A | HIS66 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 501 |
Chain | Residue |
B | LYS90 |
B | PRO96 |
B | ALA97 |
B | HOH619 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 502 |
Chain | Residue |
B | ARG262 |
B | ARG271 |
B | HIS272 |
B | HOH654 |
B | HOH749 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue SO4 C 501 |
Chain | Residue |
C | ARG262 |
C | ARG271 |
C | HIS272 |
C | HOH795 |
C | HOH749 |
site_id | AC7 |
Number of Residues | 17 |
Details | binding site for Di-peptide 3U3 B 503 and ASP B 229 |
Chain | Residue |
B | HIS66 |
B | GLU87 |
B | TRP88 |
B | HIS135 |
B | HIS136 |
B | TYR178 |
B | PHE179 |
B | SER180 |
B | VAL181 |
B | PHE228 |
B | GLY230 |
B | THR231 |
B | TRP232 |
B | ARG262 |
B | HOH654 |
B | HOH634 |
B | HOH967 |
site_id | AC8 |
Number of Residues | 17 |
Details | binding site for Di-peptide 3U3 C 502 and ASP C 229 |
Chain | Residue |
C | HIS66 |
C | GLU87 |
C | TRP88 |
C | HIS135 |
C | HIS136 |
C | TYR178 |
C | PHE179 |
C | SER180 |
C | VAL181 |
C | PHE228 |
C | GLY230 |
C | THR231 |
C | TRP232 |
C | ARG262 |
C | TRP316 |
C | HOH795 |
C | HOH615 |
site_id | AC9 |
Number of Residues | 16 |
Details | binding site for Di-peptide 3U3 D 501 and ASP D 229 |
Chain | Residue |
D | HIS66 |
D | GLU87 |
D | TRP88 |
D | HIS135 |
D | HIS136 |
D | TYR178 |
D | PHE179 |
D | SER180 |
D | VAL181 |
D | PHE228 |
D | GLY230 |
D | THR231 |
D | TRP232 |
D | ARG262 |
D | HOH631 |
D | HOH659 |