4WQ5
YgjD(V85E)-YeaZ heterodimer in complex with ATP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| A | 0005506 | molecular_function | iron ion binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006400 | biological_process | tRNA modification |
| A | 0008033 | biological_process | tRNA processing |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016746 | molecular_function | acyltransferase activity |
| A | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0061711 | molecular_function | tRNA N(6)-L-threonylcarbamoyladenine synthase activity |
| A | 0070525 | biological_process | tRNA threonylcarbamoyladenosine metabolic process |
| A | 0140032 | molecular_function | glycosylation-dependent protein binding |
| A | 1990145 | biological_process | maintenance of translational fidelity |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| B | 0005506 | molecular_function | iron ion binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006400 | biological_process | tRNA modification |
| B | 0008033 | biological_process | tRNA processing |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016746 | molecular_function | acyltransferase activity |
| B | 0016747 | molecular_function | acyltransferase activity, transferring groups other than amino-acyl groups |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0061711 | molecular_function | tRNA N(6)-L-threonylcarbamoyladenine synthase activity |
| B | 0070525 | biological_process | tRNA threonylcarbamoyladenosine metabolic process |
| B | 0140032 | molecular_function | glycosylation-dependent protein binding |
| B | 1990145 | biological_process | maintenance of translational fidelity |
| C | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| C | 0005515 | molecular_function | protein binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0008033 | biological_process | tRNA processing |
| C | 0008237 | molecular_function | metallopeptidase activity |
| C | 0042802 | molecular_function | identical protein binding |
| C | 1990145 | biological_process | maintenance of translational fidelity |
| D | 0002949 | biological_process | tRNA threonylcarbamoyladenosine modification |
| D | 0005515 | molecular_function | protein binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0008033 | biological_process | tRNA processing |
| D | 0008237 | molecular_function | metallopeptidase activity |
| D | 0042802 | molecular_function | identical protein binding |
| D | 1990145 | biological_process | maintenance of translational fidelity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue MG A 401 |
| Chain | Residue |
| A | ASP11 |
| A | GLU12 |
| A | ASP300 |
| A | ATP403 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue FE A 402 |
| Chain | Residue |
| A | HIS111 |
| A | HIS115 |
| A | ASP300 |
| A | ATP403 |
| site_id | AC3 |
| Number of Residues | 18 |
| Details | binding site for residue ATP A 403 |
| Chain | Residue |
| A | HIS115 |
| A | SER136 |
| A | GLY137 |
| A | GLY138 |
| A | HIS139 |
| A | GLY163 |
| A | ASP167 |
| A | GLY180 |
| A | PRO181 |
| A | GLY268 |
| A | VAL269 |
| A | ASN272 |
| A | CYS298 |
| A | THR299 |
| A | ASP300 |
| A | MG401 |
| A | FE402 |
| A | MET112 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | binding site for residue ACT A 405 |
| Chain | Residue |
| A | GLY149 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue ACT A 406 |
| Chain | Residue |
| A | ARG96 |
| A | ALA99 |
| A | PHE100 |
| A | VAL104 |
| site_id | AC6 |
| Number of Residues | 4 |
| Details | binding site for residue ACT A 407 |
| Chain | Residue |
| B | PHE100 |
| B | ALA101 |
| C | SER52 |
| C | LEU53 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue MG B 401 |
| Chain | Residue |
| B | ASP11 |
| B | GLU12 |
| B | ASP300 |
| B | ATP403 |
| B | HOH515 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue FE B 402 |
| Chain | Residue |
| B | HIS111 |
| B | HIS115 |
| B | ASP300 |
| B | ATP403 |
| site_id | AC9 |
| Number of Residues | 19 |
| Details | binding site for residue ATP B 403 |
| Chain | Residue |
| B | MET112 |
| B | HIS115 |
| B | SER136 |
| B | GLY137 |
| B | GLY138 |
| B | HIS139 |
| B | GLY163 |
| B | ASP167 |
| B | GLY180 |
| B | PRO181 |
| B | GLY268 |
| B | VAL269 |
| B | ASN272 |
| B | CYS298 |
| B | THR299 |
| B | ASP300 |
| B | MG401 |
| B | FE402 |
| B | HOH515 |
| site_id | AD1 |
| Number of Residues | 3 |
| Details | binding site for residue ACT B 404 |
| Chain | Residue |
| B | TYR30 |
| B | ARG53 |
| B | LYS54 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue ACT C 301 |
| Chain | Residue |
| C | ARG32 |
| C | GLU33 |
| C | HIS34 |
| C | THR35 |
| site_id | AD3 |
| Number of Residues | 4 |
| Details | binding site for residue GOL C 302 |
| Chain | Residue |
| C | SER67 |
| C | PHE68 |
| C | THR69 |
| C | ARG118 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue ACT D 301 |
| Chain | Residue |
| D | ARG32 |
| D | GLU33 |
| D | HIS34 |
| D | THR35 |
| site_id | AD5 |
| Number of Residues | 1 |
| Details | binding site for residue ACT D 302 |
| Chain | Residue |
| D | SER67 |
Functional Information from PROSITE/UniProt
| site_id | PS01016 |
| Number of Residues | 21 |
| Details | GLYCOPROTEASE Glycoprotease family signature. RSlafaWDvPaIpvhHmeGHL |
| Chain | Residue | Details |
| A | ARG96-LEU116 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 20 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01445","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
