4WHR
Anhydride reaction intermediate trapped in Protocatechuate 3,4-dioxygenase (pseudomonas putida) at pH 8.5
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005506 | molecular_function | iron ion binding |
| A | 0008199 | molecular_function | ferric iron binding |
| A | 0009056 | biological_process | catabolic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| A | 0018578 | molecular_function | protocatechuate 3,4-dioxygenase activity |
| A | 0042952 | biological_process | beta-ketoadipate pathway |
| A | 0051213 | molecular_function | dioxygenase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005506 | molecular_function | iron ion binding |
| B | 0008199 | molecular_function | ferric iron binding |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| B | 0018578 | molecular_function | protocatechuate 3,4-dioxygenase activity |
| B | 0019619 | biological_process | 3,4-dihydroxybenzoate catabolic process |
| B | 0042952 | biological_process | beta-ketoadipate pathway |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051213 | molecular_function | dioxygenase activity |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0005506 | molecular_function | iron ion binding |
| C | 0008199 | molecular_function | ferric iron binding |
| C | 0009056 | biological_process | catabolic process |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| C | 0018578 | molecular_function | protocatechuate 3,4-dioxygenase activity |
| C | 0042952 | biological_process | beta-ketoadipate pathway |
| C | 0051213 | molecular_function | dioxygenase activity |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0005506 | molecular_function | iron ion binding |
| D | 0008199 | molecular_function | ferric iron binding |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| D | 0018578 | molecular_function | protocatechuate 3,4-dioxygenase activity |
| D | 0019619 | biological_process | 3,4-dihydroxybenzoate catabolic process |
| D | 0042952 | biological_process | beta-ketoadipate pathway |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0051213 | molecular_function | dioxygenase activity |
| E | 0003824 | molecular_function | catalytic activity |
| E | 0005506 | molecular_function | iron ion binding |
| E | 0008199 | molecular_function | ferric iron binding |
| E | 0009056 | biological_process | catabolic process |
| E | 0016491 | molecular_function | oxidoreductase activity |
| E | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| E | 0018578 | molecular_function | protocatechuate 3,4-dioxygenase activity |
| E | 0042952 | biological_process | beta-ketoadipate pathway |
| E | 0051213 | molecular_function | dioxygenase activity |
| F | 0003824 | molecular_function | catalytic activity |
| F | 0005506 | molecular_function | iron ion binding |
| F | 0008199 | molecular_function | ferric iron binding |
| F | 0016491 | molecular_function | oxidoreductase activity |
| F | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| F | 0018578 | molecular_function | protocatechuate 3,4-dioxygenase activity |
| F | 0019619 | biological_process | 3,4-dihydroxybenzoate catabolic process |
| F | 0042952 | biological_process | beta-ketoadipate pathway |
| F | 0046872 | molecular_function | metal ion binding |
| F | 0051213 | molecular_function | dioxygenase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue 3N8 A 301 |
| Chain | Residue |
| A | PRO164 |
| A | ARG167 |
| A | GLU168 |
| A | ILE171 |
| A | HOH463 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | binding site for residue BME A 302 |
| Chain | Residue |
| B | PRO349 |
| B | PHE351 |
| B | SER466 |
| B | LYS473 |
| B | HOH758 |
| B | HOH814 |
| A | GLU69 |
| A | PHE92 |
| A | ARG94 |
| A | HOH484 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue 3N8 E 301 |
| Chain | Residue |
| E | PRO164 |
| E | ARG167 |
| E | GLU168 |
| E | ILE171 |
| E | HOH491 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue 3N8 C 301 |
| Chain | Residue |
| C | PRO164 |
| C | ARG167 |
| C | GLU168 |
| C | ILE171 |
| C | HOH433 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue FE D 601 |
| Chain | Residue |
| D | TYR408 |
| D | TYR447 |
| D | HIS460 |
| D | HIS462 |
| D | HOH895 |
| site_id | AC6 |
| Number of Residues | 9 |
| Details | binding site for residue 3N8 D 602 |
| Chain | Residue |
| B | PRO515 |
| D | ARG307 |
| D | PHE308 |
| D | ILE310 |
| D | PRO340 |
| D | GLN341 |
| D | ARG531 |
| D | GLU536 |
| D | HOH878 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue 3N8 D 603 |
| Chain | Residue |
| D | ARG377 |
| D | LEU416 |
| D | ALA417 |
| D | MET516 |
| site_id | AC8 |
| Number of Residues | 4 |
| Details | binding site for residue 3N8 D 604 |
| Chain | Residue |
| B | PRO515 |
| B | MET516 |
| D | SER338 |
| D | ILE339 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue 3N8 D 605 |
| Chain | Residue |
| B | ILE328 |
| B | TRS604 |
| D | ARG333 |
| D | HOH869 |
| D | HOH892 |
| site_id | AD1 |
| Number of Residues | 5 |
| Details | binding site for residue 3N8 D 606 |
| Chain | Residue |
| D | ILE495 |
| D | ALA496 |
| D | VAL501 |
| D | HOH842 |
| D | HOH893 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue FE B 601 |
| Chain | Residue |
| B | TYR408 |
| B | TYR447 |
| B | HIS460 |
| B | HIS462 |
| B | 3NJ607 |
| B | HOH882 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue 3N8 B 602 |
| Chain | Residue |
| B | ARG333 |
| B | TRS604 |
| B | HOH850 |
| B | HOH878 |
| F | PRO322 |
| F | ILE328 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue 3N8 B 603 |
| Chain | Residue |
| A | LEU160 |
| B | SER338 |
| B | ILE339 |
| B | PRO340 |
| F | ARG450 |
| F | MET516 |
| site_id | AD5 |
| Number of Residues | 8 |
| Details | binding site for residue TRS B 604 |
| Chain | Residue |
| B | ARG333 |
| B | 3N8602 |
| B | HOH850 |
| D | ARG333 |
| D | 3N8605 |
| F | ARG333 |
| F | 3N8602 |
| F | HOH747 |
| site_id | AD6 |
| Number of Residues | 9 |
| Details | binding site for residue 3N8 B 605 |
| Chain | Residue |
| B | ARG307 |
| B | PHE308 |
| B | ILE310 |
| B | PRO340 |
| B | GLN341 |
| B | ARG531 |
| B | GLU536 |
| B | HOH830 |
| F | PRO515 |
| site_id | AD7 |
| Number of Residues | 3 |
| Details | binding site for residue BME B 606 |
| Chain | Residue |
| B | ARG377 |
| B | LEU416 |
| B | ALA417 |
| site_id | AD8 |
| Number of Residues | 13 |
| Details | binding site for residue 3NJ B 607 |
| Chain | Residue |
| B | TRP449 |
| B | ARG457 |
| B | HIS460 |
| B | HIS462 |
| B | GLN477 |
| B | ILE491 |
| B | FE601 |
| B | HOH873 |
| B | HOH882 |
| A | THR12 |
| A | GLY14 |
| A | PRO15 |
| B | TYR447 |
| site_id | AD9 |
| Number of Residues | 10 |
| Details | binding site for residue 3N8 F 601 |
| Chain | Residue |
| D | PRO515 |
| F | ARG307 |
| F | PHE308 |
| F | ILE310 |
| F | PRO340 |
| F | GLN341 |
| F | ARG531 |
| F | GLU536 |
| F | HOH702 |
| F | HOH816 |
| site_id | AE1 |
| Number of Residues | 6 |
| Details | binding site for residue 3N8 F 602 |
| Chain | Residue |
| B | TRS604 |
| D | PRO322 |
| D | ILE328 |
| F | ARG333 |
| F | HOH747 |
| F | HOH852 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue 3N8 F 603 |
| Chain | Residue |
| D | ARG450 |
| D | MET516 |
| F | SER338 |
| F | ILE339 |
| F | PRO340 |
| F | HOH702 |
| site_id | AE3 |
| Number of Residues | 2 |
| Details | binding site for residue CL F 604 |
| Chain | Residue |
| F | ARG409 |
| F | PRO421 |
| site_id | AE4 |
| Number of Residues | 5 |
| Details | binding site for residue BME F 605 |
| Chain | Residue |
| A | HOH406 |
| A | HOH526 |
| F | MHO488 |
| F | MET510 |
| F | HOH728 |
| site_id | AE5 |
| Number of Residues | 4 |
| Details | binding site for residue BME F 606 |
| Chain | Residue |
| F | ARG377 |
| F | LEU416 |
| F | ALA417 |
| F | MET516 |
| site_id | AE6 |
| Number of Residues | 5 |
| Details | binding site for residue FE F 607 |
| Chain | Residue |
| F | TYR408 |
| F | TYR447 |
| F | HIS460 |
| F | HIS462 |
| F | HOH866 |
Functional Information from PROSITE/UniProt
| site_id | PS00083 |
| Number of Residues | 29 |
| Details | INTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. LlGqVydgnGhlVrdsfLEVwqadanGeY |
| Chain | Residue | Details |
| A | LEU51-TYR79 | |
| D | VAL380-TYR408 | |
| F | VAL380-TYR408 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 3 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"7990141","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | MCSA1 |
| Number of Residues | 5 |
| Details | M-CSA 936 |
| Chain | Residue | Details |
| F | TYR408 | metal ligand |
| F | ASN451 | metal ligand, proton shuttle (general acid/base) |
| F | ILE461 | electrostatic stabiliser |
| F | GLY464 | metal ligand |
| F | SER466 | metal ligand |
| site_id | MCSA2 |
| Number of Residues | 5 |
| Details | M-CSA 936 |
| Chain | Residue | Details |
| E | THR108 | metal ligand |
| E | ALA151 | metal ligand, proton shuttle (general acid/base) |
| E | ILE161 | electrostatic stabiliser |
| E | PRO164 | metal ligand |
| E | ARG166 | metal ligand |
