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4W96

Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0003824molecular_functioncatalytic activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0005794cellular_componentGolgi apparatus
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue DMF A 201
ChainResidue
AGLN57
AASN59
ATRP63
AALA107
ATRP108
ARU213
AHOH384
AHOH386

site_idAC2
Number of Residues2
Detailsbinding site for residue CL A 202
ChainResidue
AASN113
ATYR23

site_idAC3
Number of Residues3
Detailsbinding site for residue CL A 203
ChainResidue
ASER24
AGLY26
AGLN121

site_idAC4
Number of Residues3
Detailsbinding site for residue CL A 204
ChainResidue
AASN65
APRO79
AHOH387

site_idAC5
Number of Residues5
Detailsbinding site for residue CL A 205
ChainResidue
AASN65
AGLY67
AARG68
ATHR69
ASER72

site_idAC6
Number of Residues6
Detailsbinding site for residue NA A 206
ChainResidue
ASER60
ACYS64
ASER72
AARG73
AHOH375
AHOH376

site_idAC7
Number of Residues6
Detailsbinding site for residue RU1 A 207
ChainResidue
AALA11
AARG14
AHIS15
ACL208
ACL209
AHOH339

site_idAC8
Number of Residues4
Detailsbinding site for residue CL A 208
ChainResidue
AARG14
AHIS15
ARU1207
AHOH339

site_idAC9
Number of Residues4
Detailsbinding site for residue CL A 209
ChainResidue
AHIS15
AASP87
AILE88
ARU1207

site_idAD1
Number of Residues3
Detailsbinding site for residue RU A 210
ChainResidue
ALYS13
AASP18
ARU211

site_idAD2
Number of Residues3
Detailsbinding site for residue RU A 211
ChainResidue
AASP18
ARU210
ACL212

site_idAD3
Number of Residues4
Detailsbinding site for residue CL A 212
ChainResidue
AASP18
ASER24
ALEU25
ARU211

site_idAD4
Number of Residues5
Detailsbinding site for residue RU A 213
ChainResidue
AASP52
ADMF201
AHOH381
AHOH384
AHOH397

site_idAD5
Number of Residues2
Detailsbinding site for residue RU A 214
ChainResidue
AASP101
ARU215

site_idAD6
Number of Residues2
Detailsbinding site for residue RU A 215
ChainResidue
AASP101
ARU214

site_idAD7
Number of Residues2
Detailsbinding site for residue RU A 216
ChainResidue
AASP119
ACL217

site_idAD8
Number of Residues4
Detailsbinding site for residue CL A 217
ChainResidue
AASP119
AGLN121
AALA122
ARU216

site_idAD9
Number of Residues3
Detailsbinding site for residue RU A 218
ChainResidue
ALYS13
ALEU129
ALEU129

site_idAE1
Number of Residues4
Detailsbinding site for residue RU A 219
ChainResidue
ALYS13
ALYS13
ALEU129
ALEU129

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues128
DetailsDomain: {"description":"C-type lysozyme","evidences":[{"source":"PROSITE-ProRule","id":"PRU00680","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {}
ChainResidueDetails

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

246704

PDB entries from 2025-12-24

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