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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V7Q

Atomic model of an infectious rotavirus particle

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
AA0003723molecular_functionRNA binding
AA0019013cellular_componentviral nucleocapsid
AA0019028cellular_componentviral capsid
AA0039616cellular_componentT=2 icosahedral viral capsid
AA0039625cellular_componentviral inner capsid
AA0044423cellular_componentvirion component
AB0003723molecular_functionRNA binding
AB0019013cellular_componentviral nucleocapsid
AB0019028cellular_componentviral capsid
AB0039616cellular_componentT=2 icosahedral viral capsid
AB0039625cellular_componentviral inner capsid
AB0044423cellular_componentvirion component
AC0005198molecular_functionstructural molecule activity
AC0019028cellular_componentviral capsid
AC0019031cellular_componentviral envelope
AC0019064biological_processfusion of virus membrane with host plasma membrane
AC0039621cellular_componentT=13 icosahedral viral capsid
AC0039626cellular_componentviral intermediate capsid
AC0044423cellular_componentvirion component
AC0044650biological_processadhesion of symbiont to host cell
AC0046789molecular_functionhost cell surface receptor binding
AC0046872molecular_functionmetal ion binding
AD0005198molecular_functionstructural molecule activity
AD0019028cellular_componentviral capsid
AD0019031cellular_componentviral envelope
AD0019064biological_processfusion of virus membrane with host plasma membrane
AD0039621cellular_componentT=13 icosahedral viral capsid
AD0039626cellular_componentviral intermediate capsid
AD0044423cellular_componentvirion component
AD0044650biological_processadhesion of symbiont to host cell
AD0046789molecular_functionhost cell surface receptor binding
AD0046872molecular_functionmetal ion binding
AE0005198molecular_functionstructural molecule activity
AE0019028cellular_componentviral capsid
AE0019031cellular_componentviral envelope
AE0019064biological_processfusion of virus membrane with host plasma membrane
AE0039621cellular_componentT=13 icosahedral viral capsid
AE0039626cellular_componentviral intermediate capsid
AE0044423cellular_componentvirion component
AE0044650biological_processadhesion of symbiont to host cell
AE0046789molecular_functionhost cell surface receptor binding
AE0046872molecular_functionmetal ion binding
AF0005198molecular_functionstructural molecule activity
AF0019028cellular_componentviral capsid
AF0019031cellular_componentviral envelope
AF0019064biological_processfusion of virus membrane with host plasma membrane
AF0039621cellular_componentT=13 icosahedral viral capsid
AF0039626cellular_componentviral intermediate capsid
AF0044423cellular_componentvirion component
AF0044650biological_processadhesion of symbiont to host cell
AF0046789molecular_functionhost cell surface receptor binding
AF0046872molecular_functionmetal ion binding
AG0005198molecular_functionstructural molecule activity
AG0019028cellular_componentviral capsid
AG0019031cellular_componentviral envelope
AG0019064biological_processfusion of virus membrane with host plasma membrane
AG0039621cellular_componentT=13 icosahedral viral capsid
AG0039626cellular_componentviral intermediate capsid
AG0044423cellular_componentvirion component
AG0044650biological_processadhesion of symbiont to host cell
AG0046789molecular_functionhost cell surface receptor binding
AG0046872molecular_functionmetal ion binding
AH0005198molecular_functionstructural molecule activity
AH0019028cellular_componentviral capsid
AH0019031cellular_componentviral envelope
AH0019064biological_processfusion of virus membrane with host plasma membrane
AH0039621cellular_componentT=13 icosahedral viral capsid
AH0039626cellular_componentviral intermediate capsid
AH0044423cellular_componentvirion component
AH0044650biological_processadhesion of symbiont to host cell
AH0046789molecular_functionhost cell surface receptor binding
AH0046872molecular_functionmetal ion binding
AI0005198molecular_functionstructural molecule activity
AI0019028cellular_componentviral capsid
AI0019031cellular_componentviral envelope
AI0019064biological_processfusion of virus membrane with host plasma membrane
AI0039621cellular_componentT=13 icosahedral viral capsid
AI0039626cellular_componentviral intermediate capsid
AI0044423cellular_componentvirion component
AI0044650biological_processadhesion of symbiont to host cell
AI0046789molecular_functionhost cell surface receptor binding
AI0046872molecular_functionmetal ion binding
AJ0005198molecular_functionstructural molecule activity
AJ0019028cellular_componentviral capsid
AJ0019031cellular_componentviral envelope
AJ0019064biological_processfusion of virus membrane with host plasma membrane
AJ0039621cellular_componentT=13 icosahedral viral capsid
AJ0039626cellular_componentviral intermediate capsid
AJ0044423cellular_componentvirion component
AJ0044650biological_processadhesion of symbiont to host cell
AJ0046789molecular_functionhost cell surface receptor binding
AJ0046872molecular_functionmetal ion binding
AK0005198molecular_functionstructural molecule activity
AK0019028cellular_componentviral capsid
AK0019031cellular_componentviral envelope
AK0019064biological_processfusion of virus membrane with host plasma membrane
AK0039621cellular_componentT=13 icosahedral viral capsid
AK0039626cellular_componentviral intermediate capsid
AK0044423cellular_componentvirion component
AK0044650biological_processadhesion of symbiont to host cell
AK0046789molecular_functionhost cell surface receptor binding
AK0046872molecular_functionmetal ion binding
AL0005198molecular_functionstructural molecule activity
AL0019028cellular_componentviral capsid
AL0019031cellular_componentviral envelope
AL0019064biological_processfusion of virus membrane with host plasma membrane
AL0039621cellular_componentT=13 icosahedral viral capsid
AL0039626cellular_componentviral intermediate capsid
AL0044423cellular_componentvirion component
AL0044650biological_processadhesion of symbiont to host cell
AL0046789molecular_functionhost cell surface receptor binding
AL0046872molecular_functionmetal ion binding
AM0005198molecular_functionstructural molecule activity
AM0019028cellular_componentviral capsid
AM0019031cellular_componentviral envelope
AM0019064biological_processfusion of virus membrane with host plasma membrane
AM0039621cellular_componentT=13 icosahedral viral capsid
AM0039626cellular_componentviral intermediate capsid
AM0044423cellular_componentvirion component
AM0044650biological_processadhesion of symbiont to host cell
AM0046789molecular_functionhost cell surface receptor binding
AM0046872molecular_functionmetal ion binding
AN0005198molecular_functionstructural molecule activity
AN0019028cellular_componentviral capsid
AN0019031cellular_componentviral envelope
AN0019064biological_processfusion of virus membrane with host plasma membrane
AN0039621cellular_componentT=13 icosahedral viral capsid
AN0039626cellular_componentviral intermediate capsid
AN0044423cellular_componentvirion component
AN0044650biological_processadhesion of symbiont to host cell
AN0046789molecular_functionhost cell surface receptor binding
AN0046872molecular_functionmetal ion binding
AO0005198molecular_functionstructural molecule activity
AO0019028cellular_componentviral capsid
AO0019031cellular_componentviral envelope
AO0019064biological_processfusion of virus membrane with host plasma membrane
AO0039621cellular_componentT=13 icosahedral viral capsid
AO0039626cellular_componentviral intermediate capsid
AO0044423cellular_componentvirion component
AO0044650biological_processadhesion of symbiont to host cell
AO0046789molecular_functionhost cell surface receptor binding
AO0046872molecular_functionmetal ion binding
BA0019028cellular_componentviral capsid
BA0039621cellular_componentT=13 icosahedral viral capsid
BA0039624cellular_componentviral outer capsid
BA0044166cellular_componenthost cell endoplasmic reticulum lumen
BA0044423cellular_componentvirion component
BA0046813biological_processreceptor-mediated virion attachment to host cell
BA0046872molecular_functionmetal ion binding
BF0019028cellular_componentviral capsid
BF0039621cellular_componentT=13 icosahedral viral capsid
BF0039624cellular_componentviral outer capsid
BF0044166cellular_componenthost cell endoplasmic reticulum lumen
BF0044423cellular_componentvirion component
BF0046813biological_processreceptor-mediated virion attachment to host cell
BF0046872molecular_functionmetal ion binding
BG0019028cellular_componentviral capsid
BG0039621cellular_componentT=13 icosahedral viral capsid
BG0039624cellular_componentviral outer capsid
BG0044166cellular_componenthost cell endoplasmic reticulum lumen
BG0044423cellular_componentvirion component
BG0046813biological_processreceptor-mediated virion attachment to host cell
BG0046872molecular_functionmetal ion binding
BH0019028cellular_componentviral capsid
BH0039621cellular_componentT=13 icosahedral viral capsid
BH0039624cellular_componentviral outer capsid
BH0044166cellular_componenthost cell endoplasmic reticulum lumen
BH0044423cellular_componentvirion component
BH0046813biological_processreceptor-mediated virion attachment to host cell
BH0046872molecular_functionmetal ion binding
BI0019028cellular_componentviral capsid
BI0039621cellular_componentT=13 icosahedral viral capsid
BI0039624cellular_componentviral outer capsid
BI0044166cellular_componenthost cell endoplasmic reticulum lumen
BI0044423cellular_componentvirion component
BI0046813biological_processreceptor-mediated virion attachment to host cell
BI0046872molecular_functionmetal ion binding
BJ0019028cellular_componentviral capsid
BJ0039621cellular_componentT=13 icosahedral viral capsid
BJ0039624cellular_componentviral outer capsid
BJ0044166cellular_componenthost cell endoplasmic reticulum lumen
BJ0044423cellular_componentvirion component
BJ0046813biological_processreceptor-mediated virion attachment to host cell
BJ0046872molecular_functionmetal ion binding
BK0019028cellular_componentviral capsid
BK0039621cellular_componentT=13 icosahedral viral capsid
BK0039624cellular_componentviral outer capsid
BK0044166cellular_componenthost cell endoplasmic reticulum lumen
BK0044423cellular_componentvirion component
BK0046813biological_processreceptor-mediated virion attachment to host cell
BK0046872molecular_functionmetal ion binding
BL0019028cellular_componentviral capsid
BL0039621cellular_componentT=13 icosahedral viral capsid
BL0039624cellular_componentviral outer capsid
BL0044166cellular_componenthost cell endoplasmic reticulum lumen
BL0044423cellular_componentvirion component
BL0046813biological_processreceptor-mediated virion attachment to host cell
BL0046872molecular_functionmetal ion binding
BM0019028cellular_componentviral capsid
BM0039621cellular_componentT=13 icosahedral viral capsid
BM0039624cellular_componentviral outer capsid
BM0044166cellular_componenthost cell endoplasmic reticulum lumen
BM0044423cellular_componentvirion component
BM0046813biological_processreceptor-mediated virion attachment to host cell
BM0046872molecular_functionmetal ion binding
BN0019028cellular_componentviral capsid
BN0039621cellular_componentT=13 icosahedral viral capsid
BN0039624cellular_componentviral outer capsid
BN0044166cellular_componenthost cell endoplasmic reticulum lumen
BN0044423cellular_componentvirion component
BN0046813biological_processreceptor-mediated virion attachment to host cell
BN0046872molecular_functionmetal ion binding
BO0019028cellular_componentviral capsid
BO0039621cellular_componentT=13 icosahedral viral capsid
BO0039624cellular_componentviral outer capsid
BO0044166cellular_componenthost cell endoplasmic reticulum lumen
BO0044423cellular_componentvirion component
BO0046813biological_processreceptor-mediated virion attachment to host cell
BO0046872molecular_functionmetal ion binding
BP0019028cellular_componentviral capsid
BP0039621cellular_componentT=13 icosahedral viral capsid
BP0039624cellular_componentviral outer capsid
BP0044166cellular_componenthost cell endoplasmic reticulum lumen
BP0044423cellular_componentvirion component
BP0046813biological_processreceptor-mediated virion attachment to host cell
BP0046872molecular_functionmetal ion binding
BQ0019028cellular_componentviral capsid
BQ0039621cellular_componentT=13 icosahedral viral capsid
BQ0039624cellular_componentviral outer capsid
BQ0044166cellular_componenthost cell endoplasmic reticulum lumen
BQ0044423cellular_componentvirion component
BQ0046813biological_processreceptor-mediated virion attachment to host cell
BQ0046872molecular_functionmetal ion binding
BX0019028cellular_componentviral capsid
BX0019058biological_processviral life cycle
BX0019062biological_processvirion attachment to host cell
BX0020002cellular_componenthost cell plasma membrane
BX0039624cellular_componentviral outer capsid
BX0039665biological_processpermeabilization of host organelle membrane involved in viral entry into host cell
BX0044163cellular_componenthost cytoskeleton
BX0044168cellular_componenthost cell rough endoplasmic reticulum
BX0044172cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment
BX0044423cellular_componentvirion component
BX0046718biological_processsymbiont entry into host cell
BX0140267biological_processsymbiont entry into host cell via permeabilization of host membrane
BY0019028cellular_componentviral capsid
BY0019058biological_processviral life cycle
BY0019062biological_processvirion attachment to host cell
BY0020002cellular_componenthost cell plasma membrane
BY0039624cellular_componentviral outer capsid
BY0039665biological_processpermeabilization of host organelle membrane involved in viral entry into host cell
BY0044163cellular_componenthost cytoskeleton
BY0044168cellular_componenthost cell rough endoplasmic reticulum
BY0044172cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment
BY0044423cellular_componentvirion component
BY0046718biological_processsymbiont entry into host cell
BY0140267biological_processsymbiont entry into host cell via permeabilization of host membrane
BZ0019028cellular_componentviral capsid
BZ0019058biological_processviral life cycle
BZ0019062biological_processvirion attachment to host cell
BZ0020002cellular_componenthost cell plasma membrane
BZ0039624cellular_componentviral outer capsid
BZ0039665biological_processpermeabilization of host organelle membrane involved in viral entry into host cell
BZ0044163cellular_componenthost cytoskeleton
BZ0044168cellular_componenthost cell rough endoplasmic reticulum
BZ0044172cellular_componenthost cell endoplasmic reticulum-Golgi intermediate compartment
BZ0044423cellular_componentvirion component
BZ0046718biological_processsymbiont entry into host cell
BZ0140267biological_processsymbiont entry into host cell via permeabilization of host membrane
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI3
Number of Residues143
DetailsRegion: {"description":"Interaction with the inner capsid protein VP2","evidences":[{"source":"HAMAP-Rule","id":"MF_04129","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues39
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04129","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues26
DetailsRegion: {"description":"CNP motif; interaction with ITGAV/ITGB3","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15452204","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues26
DetailsRegion: {"description":"LVD motif; interaction with ITGA4/ITGB1 heterodimer","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues26
DetailsRegion: {"description":"GPR motif; interaction with ITGAX/ITGB2","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues78
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19520960","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues39
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19487668","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19520960","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues13
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"PubMed","id":"19487668","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21157433","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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