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4UTV

Crystal structure of zebrafish Sirtuin 5 in complex with 3-phenyl- succinylated CPS1-peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0036054molecular_functionprotein-malonyllysine demalonylase activity
A0036055molecular_functionprotein-succinyllysine desuccinylase activity
A0070403molecular_functionNAD+ binding
B0036054molecular_functionprotein-malonyllysine demalonylase activity
B0036055molecular_functionprotein-succinyllysine desuccinylase activity
B0070403molecular_functionNAD+ binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1299
ChainResidue
ACYS162
ACYS165
ACYS203
ACYS208

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1299
ChainResidue
BCYS162
BCYS165
BCYS203
BCYS208

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE EPE B 1300
ChainResidue
AGLU232
BALA78
BTYR98
BARG101
BHIS154
BVAL217
BPHE219
BGLU221
BTYR251
ATHR229

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE DMS B 1301
ChainResidue
AARG144
AALA145
BARG144
BALA145

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA B 1302
ChainResidue
BASP224
BASP224
BASP226
BASP226

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FSL C 1004
ChainResidue
AALA82
ATYR98
AARG101
AGLN136
AILE138
AHIS154
APHE219
AHOH2009
CLYS4

site_idAC7
Number of Residues11
DetailsBINDING SITE FOR RESIDUE F9V C 1005
ChainResidue
ATYR98
AARG101
AGLN136
AILE138
AHIS154
AVAL216
AVAL217
APHE219
AHOH2009
AHOH2011
CLYS4

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00236","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues66
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03160","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q8C196","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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