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4UOH

Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0005524molecular_functionATP binding
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
A0009142biological_processnucleoside triphosphate biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0046872molecular_functionmetal ion binding
B0004550molecular_functionnucleoside diphosphate kinase activity
B0005524molecular_functionATP binding
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
B0009142biological_processnucleoside triphosphate biosynthetic process
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0046872molecular_functionmetal ion binding
C0004550molecular_functionnucleoside diphosphate kinase activity
C0005524molecular_functionATP binding
C0006183biological_processGTP biosynthetic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
C0009142biological_processnucleoside triphosphate biosynthetic process
C0016301molecular_functionkinase activity
C0016310biological_processphosphorylation
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ADP C 1152
ChainResidue
CLYS11
CASN114
CMG1153
CHOH2017
CHOH2082
CHOH2083
CHOH2091
CHOH2107
CHOH2126
CHOH2127
CHOH2128
CTYR51
CLEU54
CPHE59
CLEU63
CARG87
CTHR93
CARG94
CVAL111

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADP B 1152
ChainResidue
BLYS11
BTYR51
BLEU54
BPHE59
BLEU63
BARG87
BTHR93
BARG94
BVAL111
BASN114
BMG1153
BHOH2025
BHOH2090
BHOH2096
BHOH2124
BHOH2125
BHOH2144

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B 1153
ChainResidue
BADP1152
BHOH2122
BHOH2124
BHOH2125

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MG C 1153
ChainResidue
CASP120
CADP1152
CHOH2060
CHOH2063
CHOH2107
CHOH2108
CHOH2126

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NiiHGSDSV
ChainResidueDetails
AASN114-VAL122

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PDB entries from 2024-09-25

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