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4UKD

UMP/CMP KINASE FROM SLIME MOLD COMPLEXED WITH ADP, UDP, BERYLLIUM FLUORIDE

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004127molecular_function(d)CMP kinase activity
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0006139biological_processnucleobase-containing compound metabolic process
A0006207biological_process'de novo' pyrimidine nucleobase biosynthetic process
A0006221biological_processpyrimidine nucleotide biosynthetic process
A0006225biological_processUDP biosynthetic process
A0009041molecular_functionUMP/dUMP kinase activity
A0016301molecular_functionkinase activity
A0016776molecular_functionphosphotransferase activity, phosphate group as acceptor
A0019205molecular_functionnucleobase-containing compound kinase activity
A0033862molecular_functionUMP kinase activity
A0036430molecular_functionCMP kinase activity
A0036431molecular_functiondCMP kinase activity
A0043100biological_processpyrimidine nucleobase salvage
A0043173biological_processnucleotide salvage
A0046705biological_processCDP biosynthetic process
A0046940biological_processnucleoside monophosphate phosphorylation
A0072528biological_processpyrimidine-containing compound biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 500
ChainResidue
AADP195
AHOH198
AHOH215
AHOH220
ABF2501
AHOH900

site_idAC2
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ADP A 195
ChainResidue
ALYS19
AGLY20
ATHR21
AARG127
AARG131
AARG176
AVAL178
AUDP196
AHOH216
AHOH232
AMG500
ABF2501
AHOH778
AHOH900
AGLY16
ASER17
AGLY18

site_idAC3
Number of Residues27
DetailsBINDING SITE FOR RESIDUE UDP A 196
ChainResidue
APRO15
AGLY16
ALYS19
AALA37
AGLY38
ALEU41
AARG42
AILE59
AGLU63
AILE64
AVAL65
ATHR70
AGLY90
APHE91
AARG93
AARG137
AARG148
AADP195
AHOH198
AHOH199
AHOH200
AHOH208
AHOH212
AHOH215
ABF2501
AHOH712
AHOH810

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BF2 A 501
ChainResidue
AARG131
AARG137
AARG148
AADP195
AUDP196
AHOH215
AMG500
AHOH900

Functional Information from PROSITE/UniProt
site_idPS00113
Number of Residues12
DetailsADENYLATE_KINASE Adenylate kinase signature. FLVDGFPRneeN
ChainResidueDetails
APHE86-ASN97

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues7
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03172, ECO:0000269|PubMed:10426946, ECO:0000269|PubMed:8703943, ECO:0000269|PubMed:9280438
ChainResidueDetails
ASER17
AGLN43
AILE64
APHE91
AGLY132
APHE149
AASP177

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_03172, ECO:0000269|PubMed:10426946, ECO:0000269|PubMed:9280438
ChainResidueDetails
AASN98
ASER138

Catalytic Information from CSA
site_idCSA1
Number of Residues6
DetailsAnnotated By Reference To The Literature 1zio
ChainResidueDetails
AARG148
ALYS19
AARG131
AASP140
AASP139
AARG137

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PDB entries from 2024-07-17

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