4U9H

Ultra High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

Functional Information from GO Data

Chain	GOid	namespace	contents
L	0008901	molecular_function	ferredoxin hydrogenase activity
L	0016151	molecular_function	nickel cation binding
L	0016491	molecular_function	oxidoreductase activity
L	0042597	cellular_component	periplasmic space
L	0046872	molecular_function	metal ion binding
L	0047806	molecular_function	cytochrome-c3 hydrogenase activity
S	0008901	molecular_function	ferredoxin hydrogenase activity
S	0009055	molecular_function	electron transfer activity
S	0009061	biological_process	anaerobic respiration
S	0009375	cellular_component	ferredoxin hydrogenase complex
S	0016020	cellular_component	membrane
S	0016491	molecular_function	oxidoreductase activity
S	0042597	cellular_component	periplasmic space
S	0044569	cellular_component	[Ni-Fe] hydrogenase complex
S	0046872	molecular_function	metal ion binding
S	0047806	molecular_function	cytochrome-c3 hydrogenase activity
S	0051536	molecular_function	iron-sulfur cluster binding
S	0051538	molecular_function	3 iron, 4 sulfur cluster binding
S	0051539	molecular_function	4 iron, 4 sulfur cluster binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue SF4 S 1001

Chain	Residue
L	HIS235
S	THR113
S	CYS114
S	GLY149
S	CYS150
S	PRO151

---

site_id	AC2
Number of Residues	7
Details	binding site for residue SF4 S 1002

Chain	Residue
S	LEU194
S	CYS216
S	LEU217
S	CYS222
S	HIS188
S	CYS191
S	ARG193

---

site_id	AC3
Number of Residues	10
Details	binding site for residue F3S S 1003

Chain	Residue
L	LYS232
L	GLN237
S	THR227
S	ASN229
S	CYS231
S	PHE236
S	TRP241
S	CYS249
S	ILE250
S	CYS252

---

site_id	AC4
Number of Residues	5
Details	binding site for residue MPD S 1004

Chain	Residue
L	MPD606
L	HOH996
S	ASN134
S	ASN146
S	HOH1226

---

site_id	AC5
Number of Residues	6
Details	binding site for residue MPD S 1005

Chain	Residue
S	ALA211
S	ARG212
S	GLY214
S	ASP244
S	HOH1151
S	HOH1220

---

site_id	AC6
Number of Residues	2
Details	binding site for residue MPD S 1006

Chain	Residue
S	TYR164
S	HOH1179

---

site_id	AC7
Number of Residues	4
Details	binding site for residue MPD S 1007

Chain	Residue
L	ALA169
L	LYS173
L	LEU213
S	HOH1113

---

site_id	AC8
Number of Residues	9
Details	binding site for residue NWN L 601

Chain	Residue
L	ALA477
L	PRO478
L	ARG479
L	LEU482
L	VAL500
L	PRO501
L	SER502
L	CYS546
L	CYS549

---

site_id	AC9
Number of Residues	5
Details	binding site for residue MG L 602

Chain	Residue
L	LEU498
L	HIS552
L	HOH726
L	HOH731
L	HOH737

---

site_id	AD1
Number of Residues	6
Details	binding site for residue MPD L 603

Chain	Residue
L	LYS321
L	MET379
L	HOH908
S	LEU194
S	ASP198
S	HOH1390

---

site_id	AD2
Number of Residues	4
Details	binding site for residue MPD L 604

Chain	Residue
L	PRO359
L	LYS360
L	TYR361
L	HOH955

---

site_id	AD3
Number of Residues	8
Details	binding site for residue MPD L 605

Chain	Residue
L	GLY193
L	GLY194
L	VAL458
L	HOH833
L	HOH1009
L	HOH1068
L	HOH1171
L	HOH1199

---

site_id	AD4
Number of Residues	6
Details	binding site for residue MPD L 606

Chain	Residue
L	ASP166
L	ALA169
L	HOH711
S	LYS143
S	MPD1004
S	HOH1159

---

site_id	AD5
Number of Residues	7
Details	binding site for residue MPD L 607

Chain	Residue
L	TYR307
L	LEU309
L	LYS332
L	PHE474
L	HOH777
L	HOH861
L	HOH994

---

site_id	AD6
Number of Residues	8
Details	binding site for residue MPD L 608

Chain	Residue
L	GLU489
L	GLY494
L	HOH1056
L	HOH1196
S	PHE197
S	PHE202
S	TYR218
S	HOH1413

---

site_id	AD7
Number of Residues	8
Details	binding site for residue MPD L 609

Chain	Residue
L	HOH1065
L	HOH1167
L	GLU348
L	TRP463
L	MET465
L	HOH852
L	HOH912
L	HOH1025

---

site_id	AD8
Number of Residues	2
Details	binding site for residue MPD L 610

Chain	Residue
S	GLU172
S	HOH1105

---

site_id	AD9
Number of Residues	8
Details	binding site for residue TRS L 611

Chain	Residue
L	GLU336
L	ALA349
L	HOH710
L	HOH876
L	HOH947
L	HOH1138
S	PRO263
S	GLN266

---

Functional Information from PROSITE/UniProt

site_id	PS00507
Number of Residues	26
Details	NI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGLEiilkgrdprdaqhftQRtCGVC

Chain	Residue	Details
L	ARG59-CYS84

---

site_id	PS00508
Number of Residues	10
Details	NI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCIACgv.H

Chain	Residue	Details
L	PHE543-HIS552

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	18
Details	Binding site: {"evidences":[{"source":"PubMed","id":"10378274","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"9438867","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1H2A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1H2R","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---