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4U6K

Crystal structure of DNA/RNA duplex containing 2'-4'-BNA-NC

Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue NCO A 101
ChainResidue
AA3
AG4
AHOH233
AHOH261
AHOH262
AHOH264

site_idAC2
Number of Residues8
Detailsbinding site for residue NCO A 102
ChainResidue
BNCU1
CA8
CG9
CHOH205
CHOH228
AA8
AG9
AHOH209

site_idAC3
Number of Residues7
Detailsbinding site for residue NCO C 101
ChainResidue
CA3
CG4
CHOH226
CHOH231
CHOH249
CHOH253
CHOH254

site_idAC4
Number of Residues18
Detailsbinding site for residues NCU B 1 and NTT B 2
ChainResidue
AA2
AA8
AG9
ANCO102
BDC3
BNTT8
BNCU9
BHOH109
BHOH113
BHOH115
BHOH116
BHOH121
BHOH136
BHOH140
BHOH146
CG9
DNCU1
DHOH128

site_idAC5
Number of Residues23
Detailsbinding site for residues NTT B 8 and NCU B 9
ChainResidue
AG1
AA2
AA3
AG9
BNCU1
BNTT2
BDT7
BHOH103
BHOH104
BHOH110
BHOH114
BHOH117
BHOH123
BHOH130
BHOH133
BHOH135
BHOH137
BHOH138
BHOH139
BHOH144
CG1
DNCU1
DHOH113

site_idAC6
Number of Residues14
Detailsbinding site for residues NCU D 1 and NTT D 2
ChainResidue
AG9
BNCU1
BNCU9
CA8
CG9
CHOH215
DDC3
DHOH113
DHOH115
DHOH116
DHOH120
DHOH125
DHOH128
DHOH137

site_idAC7
Number of Residues15
Detailsbinding site for Di-nucleotide NTT D 2 and DC D 3
ChainResidue
CG7
CA8
CG9
DNCU1
DDT4
DHOH108
DHOH109
DHOH115
DHOH116
DHOH120
DHOH125
DHOH126
DHOH133
DHOH137
DHOH142

site_idAC8
Number of Residues12
Detailsbinding site for Di-nucleotide DT D 7 and NTT D 8
ChainResidue
DHOH121
DHOH122
DHOH124
DHOH130
CA2
CA3
CG4
DDC6
DNCU9
DHOH102
DHOH111
DHOH112

site_idAC9
Number of Residues19
Detailsbinding site for residues NTT D 8 and NCU D 9
ChainResidue
AG1
CG1
CA2
CA3
DDT7
DHOH101
DHOH102
DHOH106
DHOH107
DHOH111
DHOH114
DHOH119
DHOH121
DHOH122
DHOH129
DHOH130
DHOH132
DHOH134
DHOH139

249697

PDB entries from 2026-02-25

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