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4U63

Crystal structure of a bacterial class III photolyase from Agrobacterium tumefaciens at 1.67A resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0000719biological_processphotoreactive repair
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006281biological_processDNA repair
A0006950biological_processresponse to stress
A0016829molecular_functionlyase activity
A0071949molecular_functionFAD binding
A0097159molecular_functionorganic cyclic compound binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue MHF A 1001
ChainResidue
APRO194
ATHR371
AHOH1111
AHOH1179
AHOH1308
ATRP196
APHE200
AARG320
ALEU335
ATRP336
ATRP336
AGLY339
AASP370

site_idAC2
Number of Residues32
Detailsbinding site for residue FAD A 1002
ChainResidue
ATYR226
AARG230
ATHR238
ASER239
ALEU240
ALEU241
ASER242
ALEU245
APHE274
AGLU277
AILE278
AARG281
ACYS284
AMET341
AASN343
AARG346
AMET347
APHE368
ALEU372
AASP374
AALA375
AASP376
ASER379
AASN380
AASN383
ATRP384
AHOH1205
AHOH1218
AHOH1241
AHOH1248
AHOH1318
AHOH1437

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 1003
ChainResidue
AARG100
ASER128
AARG137

site_idAC4
Number of Residues9
Detailsbinding site for residue SO4 A 1004
ChainResidue
AARG100
ALYS114
AARG118
AARG125
ASER126
AHOH1339
AHOH1407
AHOH1427
AHOH1553

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 1005
ChainResidue
AARG273
ALYS276
AHOH1327
AHOH1542

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 A 1006
ChainResidue
ATRP153
AARG154
ALYS276
AHOH1303
AHOH1462
AHOH1542

site_idAC7
Number of Residues2
Detailsbinding site for residue SO4 A 1007
ChainResidue
AARG72
AHOH1494

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 A 1008
ChainResidue
ALYS260
AGLY261
AARG275
AHOH1498

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 A 1009
ChainResidue
ASER263
AARG264
ALYS297
AHOH1102
AHOH1152

site_idAD1
Number of Residues5
Detailsbinding site for residue SO4 A 1010
ChainResidue
AGLY412
AASP413
AARG429
AHOH1263
AHOH1555

site_idAD2
Number of Residues5
Detailsbinding site for residue SO4 A 1011
ChainResidue
ATHR5
AGLY31
AGLY32
AHOH1533
AHOH1538

site_idAD3
Number of Residues1
Detailsbinding site for residue SO4 A 1012
ChainResidue
AARG309

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 A 1013
ChainResidue
ALYS183
ALEU184
ASER185
AHOH1470
AHOH1595

site_idAD5
Number of Residues2
Detailsbinding site for residue SO4 A 1014
ChainResidue
AASP79
AARG82

site_idAD6
Number of Residues6
Detailsbinding site for residue SO4 A 1015
ChainResidue
APRO206
ATRS1017
AHOH1267
AHIS57
ATRP204
ATHR205

site_idAD7
Number of Residues3
Detailsbinding site for residue SO4 A 1016
ChainResidue
ATRP386
AASP393
AHOH1391

site_idAD8
Number of Residues10
Detailsbinding site for residue TRS A 1017
ChainResidue
ATRP53
AHIS57
ALEU190
AASP195
AALA197
ASO41015
AHOH1264
AHOH1332
AHOH1646
AHOH1647

Functional Information from PROSITE/UniProt
site_idPS00394
Number of Residues13
DetailsDNA_PHOTOLYASES_1_1 DNA photolyases class 1 signature 1. TGyPIVDAgMRqL
ChainResidueDetails
ATHR323-LEU335

site_idPS00691
Number of Residues20
DetailsDNA_PHOTOLYASES_1_2 DNA photolyases class 1 signature 2. NRvRMIvASFLiKhLlidWR
ChainResidueDetails
AASN343-ARG362

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P00914
ChainResidueDetails
ATYR226
ATHR238
AGLU277
AASP374

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AARG230
AGLN406

site_idSWS_FT_FI3
Number of Residues3
DetailsSITE: Electron transfer via tryptophanyl radical => ECO:0000250|UniProtKB:P00914
ChainResidueDetails
ATRP308
ATRP361
ATRP384

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PDB entries from 2024-07-17

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