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4TQS

Ternary complex of Y-family DNA polymerase Dpo4 with (5'S)-8,5'-Cyclo-2'-deoxyguanosine and dCTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue DCP A 401
ChainResidue
AASP7
AASP105
AMG402
AMG403
AHOH602
AHOH605
AHOH613
AHOH617
AHOH619
AHOH624
AHOH696
APHE8
AHOH722
PDT12
PDOC101
TDG6
TDA7
ATYR10
APHE11
AALA44
ATHR45
ATYR48
AARG51
AGLY58

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 402
ChainResidue
AASP7
APHE8
AASP105
ADCP401
AMG403

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 403
ChainResidue
AASP7
AASP105
AGLU106
ADCP401
AMG402
PDOC101
PHOH211

site_idAC4
Number of Residues24
Detailsbinding site for residue DCP B 401
ChainResidue
BASP7
BPHE8
BASP9
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BTYR48
BARG51
BALA57
BGLY58
BASP105
BLYS159
BMG402
BMG403
BHOH507
BHOH514
BHOH580
BHOH621
CDT12
CDOC101
DDG6
DDA7

site_idAC5
Number of Residues7
Detailsbinding site for residue MG B 402
ChainResidue
BASP7
BASP105
BGLU106
BDCP401
BMG403
CDOC101
CHOH207

site_idAC6
Number of Residues5
Detailsbinding site for residue MG B 403
ChainResidue
BASP7
BPHE8
BASP105
BDCP401
BMG402

site_idAC7
Number of Residues13
Detailsbinding site for residue DOC C 101
ChainResidue
BALA102
BASP105
BGLU106
BLYS152
BDCP401
BMG402
BHOH518
CDT11
CDT12
CHOH203
CHOH207
CHOH210
DDC11

site_idAC8
Number of Residues19
Detailsbinding site for Di-nucleotide DOC P 101 and DT P 12
ChainResidue
TDA7
TDA8
TDT9
TDC10
THOH112
AALA102
AASP105
AGLU106
ALYS152
AGLY185
ADCP401
AMG403
PDA10
PDT11
PHOH202
PHOH205
PHOH207
PHOH210
PHOH211

site_idAC9
Number of Residues11
Detailsbinding site for Di-nucleotide 2LF T 5 and DG T 6
ChainResidue
ASER34
AGLY41
AALA42
AGLY58
APRO60
ADCP401
AHOH646
AHOH691
TDA7
THOH104
THOH105

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

224572

PDB entries from 2024-09-04

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