4S1Z
Crystal structure of TRABID NZF1 in complex with K29 linked di-Ubiquitin
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN F 101 |
| Chain | Residue |
| F | CYS10 |
| F | CYS13 |
| F | CYS24 |
| F | CYS27 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN G 101 |
| Chain | Residue |
| G | CYS10 |
| G | CYS13 |
| G | CYS24 |
| G | CYS27 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN H 101 |
| Chain | Residue |
| H | CYS13 |
| H | CYS24 |
| H | CYS27 |
| H | CYS10 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN J 101 |
| Chain | Residue |
| J | CYS10 |
| J | CYS13 |
| J | CYS24 |
| J | CYS27 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN I 101 |
| Chain | Residue |
| I | CYS10 |
| I | CYS13 |
| I | CYS24 |
| I | CYS27 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 150 |
| Details | ZN_FING: RanBP2-type 1 => ECO:0000255|PROSITE-ProRule:PRU00322 |
| Chain | Residue | Details |
| F | GLU3-SER33 | |
| E | ARG72 | |
| G | GLU3-SER33 | |
| H | GLU3-SER33 | |
| J | GLU3-SER33 | |
| I | GLU3-SER33 | |
| C | ARG72 | |
| D | ARG54 | |
| D | ARG72 | |
| E | ARG54 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 20 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00322, ECO:0000269|PubMed:25752573, ECO:0007744|PDB:4S1Z |
| Chain | Residue | Details |
| F | CYS10 | |
| H | CYS13 | |
| H | CYS24 | |
| H | CYS27 | |
| J | CYS10 | |
| J | CYS13 | |
| J | CYS24 | |
| J | CYS27 | |
| I | CYS10 | |
| I | CYS13 | |
| I | CYS24 | |
| F | CYS13 | |
| I | CYS27 | |
| F | CYS24 | |
| F | CYS27 | |
| G | CYS10 | |
| G | CYS13 | |
| G | CYS24 | |
| G | CYS27 | |
| H | CYS10 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 5 |
| Details | MOD_RES: Phosphoserine; by PINK1 => ECO:0000269|PubMed:24660806, ECO:0000269|PubMed:24751536, ECO:0000269|PubMed:24784582, ECO:0000269|PubMed:25474007, ECO:0000269|PubMed:25527291 |
| Chain | Residue | Details |
| A | SER65 | |
| B | SER65 | |
| C | SER65 | |
| D | SER65 | |
| E | SER65 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 5 |
| Details | MOD_RES: (Microbial infection) ADP-ribosylthreonine => ECO:0000269|PubMed:32330457 |
| Chain | Residue | Details |
| A | THR66 | |
| B | THR66 | |
| C | THR66 | |
| D | THR66 | |
| E | THR66 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 5 |
| Details | MOD_RES: ADP-ribosylglycine => ECO:0000269|PubMed:28525742 |
| Chain | Residue | Details |
| A | GLY76 | |
| B | GLY76 | |
| C | GLY76 | |
| D | GLY76 | |
| E | GLY76 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 5 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603 |
| Chain | Residue | Details |
| A | LYS6 | |
| B | LYS6 | |
| C | LYS6 | |
| D | LYS6 | |
| E | LYS6 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 10 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) |
| Chain | Residue | Details |
| E | GLY76 | |
| A | GLY76 | |
| B | GLY76 | |
| C | GLY76 | |
| D | GLY76 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 10 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144 |
| Chain | Residue | Details |
| A | LYS11 | |
| E | LYS48 | |
| A | LYS48 | |
| B | LYS11 | |
| B | LYS48 | |
| C | LYS11 | |
| C | LYS48 | |
| D | LYS11 | |
| D | LYS48 | |
| E | LYS11 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 5 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860 |
| Chain | Residue | Details |
| A | LYS27 | |
| B | LYS27 | |
| C | LYS27 | |
| D | LYS27 | |
| E | LYS27 |
| site_id | SWS_FT_FI10 |
| Number of Residues | 5 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127 |
| Chain | Residue | Details |
| A | LYS29 | |
| B | LYS29 | |
| C | LYS29 | |
| D | LYS29 | |
| E | LYS29 |
| site_id | SWS_FT_FI11 |
| Number of Residues | 5 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577 |
| Chain | Residue | Details |
| A | LYS33 | |
| B | LYS33 | |
| C | LYS33 | |
| D | LYS33 | |
| E | LYS33 |
| site_id | SWS_FT_FI12 |
| Number of Residues | 5 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106 |
| Chain | Residue | Details |
| A | LYS63 | |
| B | LYS63 | |
| C | LYS63 | |
| D | LYS63 | |
| E | LYS63 |
