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4S00

Crystal structure of metallopeptidase-like dimethylsulphoniopropionate (DMSP) lyase RlDddP mutant Y366A in complex with acrylate

Functional Information from GO Data
ChainGOidnamespacecontents
A0046872molecular_functionmetal ion binding
B0046872molecular_functionmetal ion binding
C0046872molecular_functionmetal ion binding
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A 501
ChainResidue
AASP307
AHIS371
AGLU406
AGLU421
AFE502
AAKR503

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A 502
ChainResidue
AGLU421
AFE501
AAKR503
AASP295
AASP297
AASP307

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE AKR A 503
ChainResidue
ALEU267
AASP297
AASP377
AFE501
AFE502
CMET92
CTRP95
CGOL504

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
ATYR117
AASP143
AHOH921
CCYS368
CHIS371
CLEU381
CGLU406
CAKR503

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A 505
ChainResidue
AASP143
AARG144
AHOH655
AHOH927
AHOH1191
CSER392
CTYR393

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE B 501
ChainResidue
BASP307
BHIS371
BGLU406
BGLU421
BFE502
BAKR503

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE B 502
ChainResidue
BASP295
BASP297
BASP307
BGLU421
BFE501
BAKR503

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AKR B 503
ChainResidue
BLEU267
BASP297
BASP377
BFE501
BFE502
BHOH1166
DMET92
DTRP95
DGOL503

site_idAC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AKR B 504
ChainResidue
BMET92
BTRP95
DLEU267
DASP297
DASP307
DASP377
DFE501
DFE502
DGOL504

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL B 505
ChainResidue
BASP143
BARG144
BHOH676
BHOH1064
BHOH1168
DALA383
DLYS387
DTYR393

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE C 501
ChainResidue
CASP307
CHIS371
CGLU406
CGLU421
CFE502
CAKR503

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE C 502
ChainResidue
CASP295
CASP297
CASP307
CGLU421
CFE501
CAKR503

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE AKR C 503
ChainResidue
AMET92
ATRP95
AGOL504
CLEU267
CASP297
CASP307
CASP377
CFE501
CFE502

site_idBC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL C 504
ChainResidue
CTRP95
CTYR117
CPHE142
CASP143
CHOH912
CHOH1120
AHIS371
AASP377
ALEU381
AGLU406
AAKR503

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL C 505
ChainResidue
AHOH1106
CSER135
CGLY136
CARG144
CHOH1048
CHOH1073

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE D 501
ChainResidue
BAKR504
DASP307
DHIS371
DGLU406
DGLU421
DFE502

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE D 502
ChainResidue
BAKR504
DASP295
DASP297
DASP307
DGLU421
DFE501

site_idBC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL D 503
ChainResidue
BHIS371
BGLU406
BAKR503
BHOH1100
DTRP95
DTYR117
DPHE142
DASP143
DHOH1068

site_idCC1
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL D 504
ChainResidue
BTYR117
BPHE142
BASP143
BAKR504
DCYS368
DHIS371
DASP377
DGLU406
DHOH687
DHOH1069

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL D 505
ChainResidue
BTYR393
DASP143
DARG144
DHOH620
DHOH919
DHOH994

220113

PDB entries from 2024-05-22

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