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4RZZ

Crystal structure of metallopeptidase-like dimethylsulphoniopropionate (DMSP) lyase RlDddP in complex with phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0046872molecular_functionmetal ion binding
B0046872molecular_functionmetal ion binding
C0046872molecular_functionmetal ion binding
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE A 501
ChainResidue
AASP307
AHIS371
AGLU406
AGLU421
AFE502
APO4503
AHOH663

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A 502
ChainResidue
AASP307
AFE501
APO4503
AHOH663
AASP295
AASP297

site_idAC3
Number of Residues15
DetailsBINDING SITE FOR RESIDUE PO4 A 503
ChainResidue
AASP295
AASP297
AASP307
ATYR366
AHIS371
AASP377
AGLU406
AFE501
AFE502
AHOH663
AHOH992
AHOH1000
AHOH1107
AHOH1108
AHOH1117

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
AASP143
AARG144
AHOH719
AHOH1004
CLYS387

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE B 501
ChainResidue
BASP307
BHIS371
BGLU406
BGLU421
BFE502
BPO4503
BHOH687

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE B 502
ChainResidue
BASP295
BASP297
BASP307
BFE501
BPO4503
BHOH687

site_idAC7
Number of Residues13
DetailsBINDING SITE FOR RESIDUE PO4 B 503
ChainResidue
BASP295
BASP297
BASP307
BTYR366
BHIS371
BASP377
BGLU406
BFE501
BFE502
BHOH687
BHOH1144
BHOH1145
DHOH1026

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL B 504
ChainResidue
BASP143
BARG144
BHOH693
BHOH1035
DLEU381
DLYS387
DVAL389

site_idAC9
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL B 505
ChainResidue
BALA383
BLYS387
BVAL389
BTYR393
BHOH752
BHOH852
BHOH1009
DASP143
DARG144
DHOH621

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE C 501
ChainResidue
CASP307
CHIS371
CGLU406
CGLU421
CFE502
CPO4503
CHOH661

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE C 502
ChainResidue
CASP295
CASP297
CASP307
CFE501
CPO4503
CHOH661

site_idBC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PO4 C 503
ChainResidue
CHOH661
CHOH850
CHOH1043
CHOH1049
CASP295
CASP297
CASP307
CTYR366
CHIS371
CASP377
CGLU406
CFE501
CFE502
CHOH653

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL C 504
ChainResidue
AALA383
ALYS387
AHOH851
CASP143
CARG144
CHOH635
CHOH663
CHOH942

site_idBC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FE D 501
ChainResidue
DASP307
DHIS371
DGLU406
DGLU421
DFE502
DPO4503
DHOH1024

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE D 502
ChainResidue
DASP295
DASP297
DASP307
DFE501
DPO4503
DHOH1024

site_idBC7
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PO4 D 503
ChainResidue
DASP297
DASP307
DTYR366
DHIS371
DASP377
DGLU406
DFE501
DFE502
DHOH628
DHOH928
DHOH933
DHOH1034

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PDB entries from 2024-10-30

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