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4RIT

The yellow crystal structure of pyridoxal-dependent decarboxylase from sphaerobacter thermophilus dsm 20745

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0016830molecular_functioncarbon-carbon lyase activity
A0016831molecular_functioncarboxy-lyase activity
A0019752biological_processcarboxylic acid metabolic process
A0030170molecular_functionpyridoxal phosphate binding
B0005737cellular_componentcytoplasm
B0016830molecular_functioncarbon-carbon lyase activity
B0016831molecular_functioncarboxy-lyase activity
B0019752biological_processcarboxylic acid metabolic process
B0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 501
ChainResidue
BARG396
BLEU397

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL B 502
ChainResidue
AHIS353
AHOH643
AHOH686
BHOH616
BHOH661

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL B 503
ChainResidue
BPRO457
BTYR458
BHOH729
BHOH750
ALEU6
AHOH791

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 504
ChainResidue
BLEU374
BASP377
BGLY378
BLEU381
BLEU454
BLEU455
BASN456
BPRO457
BHOH628
BHOH750
BHOH787

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 505
ChainResidue
AALA71
AMSE75
BTRP360
BHOH719

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL B 506
ChainResidue
BARG409
BALA417
BTRP420
BHOH708
BHOH886

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 507
ChainResidue
ATHR64
BARG384
BGLU387
BGLY388
BGLN391
BARG392
BASP465
BPHE468
BHOH868

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE TRS B 508
ChainResidue
BLEU136
BPHE137
BARG286
BGLU293

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE TRS B 509
ChainResidue
BGLY266
BLEU267
BTRP268
BASP296
BHOH871

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CL A 501
ChainResidue
ALEU397

site_idBC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A 502
ChainResidue
ATHR127
AGLY144
AGLY145
AILE346
AHOH628
AHOH682
AHOH796
AHOH861

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 503
ChainResidue
AARG124
AARG131
APHE340

site_idBC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL A 504
ChainResidue
ATYR307
ALEU374
AASP377
AGLY378
ALEU381
ALEU454
ALEU455
AASN456
APRO457
AHOH820
AHOH832

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL A 505
ChainResidue
AARG384
AGLU387
AASP465
APHE468
AHOH864
AHOH865

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 506
ChainResidue
AGLU117
AHOH826
BGLN428
BSER440
BLEU441

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 507
ChainResidue
AGLY266
ALEU267
AASP296
AHOH778
AHOH856

site_idBC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE TRS A 508
ChainResidue
ALEU136
APHE137
AARG286
ALEU289
AALA290
AGLU293

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PDB entries from 2024-11-06

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