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4R7M

Structure of the m17 leucyl aminopeptidase from malaria complexed with a hydroxamic acid-based inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006508biological_processproteolysis
A0019538biological_processprotein metabolic process
A0030145molecular_functionmanganese ion binding
A0046872molecular_functionmetal ion binding
A0070006molecular_functionmetalloaminopeptidase activity
B0005737cellular_componentcytoplasm
B0006508biological_processproteolysis
B0019538biological_processprotein metabolic process
B0030145molecular_functionmanganese ion binding
B0046872molecular_functionmetal ion binding
B0070006molecular_functionmetalloaminopeptidase activity
C0005737cellular_componentcytoplasm
C0006508biological_processproteolysis
C0019538biological_processprotein metabolic process
C0030145molecular_functionmanganese ion binding
C0046872molecular_functionmetal ion binding
C0070006molecular_functionmetalloaminopeptidase activity
D0005737cellular_componentcytoplasm
D0006508biological_processproteolysis
D0019538biological_processprotein metabolic process
D0030145molecular_functionmanganese ion binding
D0046872molecular_functionmetal ion binding
D0070006molecular_functionmetalloaminopeptidase activity
E0005737cellular_componentcytoplasm
E0006508biological_processproteolysis
E0019538biological_processprotein metabolic process
E0030145molecular_functionmanganese ion binding
E0046872molecular_functionmetal ion binding
E0070006molecular_functionmetalloaminopeptidase activity
F0005737cellular_componentcytoplasm
F0006508biological_processproteolysis
F0019538biological_processprotein metabolic process
F0030145molecular_functionmanganese ion binding
F0046872molecular_functionmetal ion binding
F0070006molecular_functionmetalloaminopeptidase activity
G0005737cellular_componentcytoplasm
G0006508biological_processproteolysis
G0019538biological_processprotein metabolic process
G0030145molecular_functionmanganese ion binding
G0046872molecular_functionmetal ion binding
G0070006molecular_functionmetalloaminopeptidase activity
H0005737cellular_componentcytoplasm
H0006508biological_processproteolysis
H0019538biological_processprotein metabolic process
H0030145molecular_functionmanganese ion binding
H0046872molecular_functionmetal ion binding
H0070006molecular_functionmetalloaminopeptidase activity
I0005737cellular_componentcytoplasm
I0006508biological_processproteolysis
I0019538biological_processprotein metabolic process
I0030145molecular_functionmanganese ion binding
I0046872molecular_functionmetal ion binding
I0070006molecular_functionmetalloaminopeptidase activity
J0005737cellular_componentcytoplasm
J0006508biological_processproteolysis
J0019538biological_processprotein metabolic process
J0030145molecular_functionmanganese ion binding
J0046872molecular_functionmetal ion binding
J0070006molecular_functionmetalloaminopeptidase activity
K0005737cellular_componentcytoplasm
K0006508biological_processproteolysis
K0019538biological_processprotein metabolic process
K0030145molecular_functionmanganese ion binding
K0046872molecular_functionmetal ion binding
K0070006molecular_functionmetalloaminopeptidase activity
L0005737cellular_componentcytoplasm
L0006508biological_processproteolysis
L0019538biological_processprotein metabolic process
L0030145molecular_functionmanganese ion binding
L0046872molecular_functionmetal ion binding
L0070006molecular_functionmetalloaminopeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 1001
ChainResidue
ALYS374
AASP379
AASP399
AGLU461
AZN1003
A3MW1006

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO3 A 1002
ChainResidue
AARG463
ALEU487
A3MW1006
ALYS374
AALA460
AGLY462

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 1003
ChainResidue
AASP379
ALYS386
AASP459
AGLU461
AZN1001
A3MW1006

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE 1PE A 1004
ChainResidue
AALA388
APRO389
AGLY489
A3MW1006

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE 1PE A 1005
ChainResidue
ATYR103
AHIS108
ATYR411

site_idAC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 3MW A 1006
ChainResidue
ALYS374
AASP379
ALYS386
AMET392
AMET396
AASP399
AASN457
AASP459
AGLU461
ALEU487
ATHR488
AGLY489
ALEU492
AZN1001
ACO31002
AZN1003
A1PE1004

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 1001
ChainResidue
BLYS374
BASP379
BASP399
BGLU461
BZN1003
B3MW1005

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO3 B 1002
ChainResidue
BLYS374
BALA460
BGLY462
BARG463
BLEU487
B3MW1005

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 1003
ChainResidue
BASP379
BASP459
BGLU461
BZN1001
B3MW1005

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 1004
ChainResidue
ASER435
ALYS436
BSER435
BLYS436
CSER435
CLYS436

site_idBC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 3MW B 1005
ChainResidue
BLYS374
BASP379
BLYS386
BMET392
BPHE398
BASN457
BASP459
BGLU461
BLEU487
BTHR488
BGLY489
BZN1001
BCO31002
BZN1003
BHOH1111

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN C 1001
ChainResidue
CLYS374
CASP379
CASP399
CGLU461
CZN1003
C3MW1007

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CO3 C 1002
ChainResidue
CLYS374
CGLY462
CARG463
CLEU487
C3MW1007

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN C 1003
ChainResidue
CASP379
CASP459
CGLU461
CZN1001
C3MW1007

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 1004
ChainResidue
CGLY126
CLEU219
CSER220

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 1PE C 1005
ChainResidue
CTYR103
CHIS108
CPHE289
CLYS320
CLEU321
CTYR411

site_idBC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE 1PE C 1006
ChainResidue
CILE529
CILE530
CASN531
CGLU532
DGLU200
DALA201
DSER498
DTYR499
DHOH1126

site_idBC9
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3MW C 1007
ChainResidue
CLYS374
CASP379
CLYS386
CMET392
CASP459
CGLU461
CLEU487
CTHR488
CGLY489
CLEU492
CALA577
CZN1001
CCO31002
CZN1003

site_idCC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN D 1001
ChainResidue
DLYS374
DASP379
DASP399
DGLU461
DZN1003
D3MW1004

site_idCC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO3 D 1002
ChainResidue
DLYS374
DALA460
DGLU461
DGLY462
DARG463
DLEU487
D3MW1004

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN D 1003
ChainResidue
DASP379
DASP459
DGLU461
DZN1001
D3MW1004

site_idCC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE 3MW D 1004
ChainResidue
DLYS374
DASP379
DLYS386
DMET392
DASP399
DASN457
DASP459
DGLU461
DLEU487
DTHR488
DGLY489
DLEU492
DALA577
DZN1001
DCO31002
DZN1003

site_idCC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN E 1001
ChainResidue
ELYS374
EASP379
EASP399
EGLU461
EZN1003
E3MW1007

site_idCC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO3 E 1002
ChainResidue
ELYS374
EALA460
EGLU461
EGLY462
EARG463
ELEU487
E3MW1007

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN E 1003
ChainResidue
EASP379
EASP459
EGLU461
EZN1001
E3MW1007

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 E 1004
ChainResidue
DSER435
DLYS436
ESER435
ELYS436
FSER435
FLYS436

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 1PE E 1005
ChainResidue
ETYR103
EASN104
EHIS108
EPHE289
ELYS320
ETYR411

site_idDC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE 1PE E 1006
ChainResidue
ETYR103
ELYS320

site_idDC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3MW E 1007
ChainResidue
EASP379
ELYS386
EMET392
EPHE398
EASP399
EASP459
EGLU461
ELEU487
ETHR488
EGLY489
EALA577
EZN1001
ECO31002
EZN1003

site_idDC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN F 1001
ChainResidue
FLYS374
FASP379
FASP399
FGLU461
FZN1003
F3MW1005

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO3 F 1002
ChainResidue
FLYS374
FALA460
FGLY462
FARG463
FLEU487
F3MW1005

site_idDC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN F 1003
ChainResidue
FASP379
FASP459
FGLU461
FZN1001
F3MW1005

site_idDC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE 1PE F 1004
ChainResidue
FASP95
FPRO96
FTHR97

site_idDC7
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3MW F 1005
ChainResidue
FLYS374
FASP379
FMET392
FASP399
FASP459
FGLU461
FLEU487
FTHR488
FGLY489
FLEU492
FILE547
FZN1001
FCO31002
FZN1003

site_idDC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN G 1001
ChainResidue
GLYS374
GASP379
GASP399
GGLU461
GZN1003
G3MW1008

site_idDC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO3 G 1002
ChainResidue
GLYS374
GALA460
GGLU461
GGLY462
GARG463
GLEU487
G3MW1008

site_idEC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN G 1003
ChainResidue
GASP379
GASP459
GGLU461
GZN1001
G3MW1008

site_idEC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 1004
ChainResidue
GSER435
GLYS436
HSER435
HLYS436
ISER435
ILYS436

site_idEC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 G 1005
ChainResidue
GTYR244
GASP249
GTYR292
GSER295
GLYS587
ITYR541

site_idEC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 1PE G 1006
ChainResidue
GTYR103
GASN104
GHIS108
GLYS320
GTYR411
G1PE1007

site_idEC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE G 1007
ChainResidue
GTYR103
GASN104
GGLU316
GLYS320
G1PE1006

site_idEC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE 3MW G 1008
ChainResidue
GLYS374
GASP379
GLYS386
GMET392
GMET396
GPHE398
GASP459
GGLU461
GARG463
GLEU487
GTHR488
GGLY489
GSER554
GALA577
GZN1001
GCO31002
GZN1003

site_idEC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN H 1001
ChainResidue
HLYS374
HASP379
HASP399
HGLU461
HZN1003
H3MW1005

site_idEC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO3 H 1002
ChainResidue
HLYS374
HALA460
HGLY462
HARG463
HLEU487
H3MW1005

site_idEC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN H 1003
ChainResidue
HASP379
HASP459
HGLU461
HZN1001
H3MW1005

site_idFC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE H 1004
ChainResidue
BASN104
HTYR103
HASN104
HLYS320
HTYR411

site_idFC2
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3MW H 1005
ChainResidue
HLYS374
HASP379
HLYS386
HMET392
HPHE398
HASN457
HASP459
HGLU461
HLEU487
HTHR488
HGLY489
HZN1001
HCO31002
HZN1003

site_idFC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN I 1001
ChainResidue
ILYS374
IASP379
IASP399
IGLU461
IZN1003
I3MW1004

site_idFC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO3 I 1002
ChainResidue
ILYS374
IALA460
IGLU461
IGLY462
IARG463
ILEU487
I3MW1004

site_idFC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN I 1003
ChainResidue
IASP379
IASP459
IGLU461
IZN1001
I3MW1004

site_idFC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 3MW I 1004
ChainResidue
ILYS374
IASP379
ILYS386
IMET392
IPHE398
IASP399
IASP459
IGLU461
ILEU487
ITHR488
IGLY489
ISER554
IZN1001
ICO31002
IZN1003

site_idFC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN J 1001
ChainResidue
JLYS374
JASP379
JASP399
JGLU461
JZN1003
J3MW1005

site_idFC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO3 J 1002
ChainResidue
JLYS374
JALA460
JGLY462
JARG463
JLEU487
J3MW1005

site_idFC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN J 1003
ChainResidue
JASP379
JLYS386
JASP459
JGLU461
JZN1001
J3MW1005

site_idGC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 J 1004
ChainResidue
JSER435
JLYS436
KSER435
KLYS436
LSER435
LLYS436

site_idGC2
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 3MW J 1005
ChainResidue
JLYS374
JASP379
JLYS386
JMET392
JPHE398
JASN457
JASP459
JGLU461
JLEU487
JTHR488
JGLY489
JALA577
JZN1001
JCO31002
JZN1003

site_idGC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN K 1001
ChainResidue
KLYS374
KASP379
KASP399
KGLU461
KZN1003
K3MW1006

site_idGC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CO3 K 1002
ChainResidue
KLYS374
KALA460
KGLU461
KGLY462
KARG463
KLEU487
K3MW1006

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN K 1003
ChainResidue
KASP379
KASP459
KGLU461
KZN1001
K3MW1006

site_idGC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 K 1004
ChainResidue
KTYR103
KASN104

site_idGC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE 1PE K 1005
ChainResidue
KTYR103
KHIS108
KPHE289
KLYS320
KTYR411

site_idGC8
Number of Residues14
DetailsBINDING SITE FOR RESIDUE 3MW K 1006
ChainResidue
KLYS374
KASP379
KLYS386
KMET392
KPHE398
KASN457
KASP459
KGLU461
KLEU487
KTHR488
KGLY489
KZN1001
KCO31002
KZN1003

site_idGC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE DMS K 1007
ChainResidue
KGLY390
KSER391
KMET392

site_idHC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN L 1001
ChainResidue
LLYS374
LASP379
LASP399
LGLU461
LZN1003
L3MW1005

site_idHC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CO3 L 1002
ChainResidue
LLYS374
LALA460
LGLY462
LARG463
LLEU487
L3MW1005

site_idHC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN L 1003
ChainResidue
LASP379
LASP459
LGLU461
LZN1001
L3MW1005

site_idHC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 L 1004
ChainResidue
LGLU102
LTYR103
LASN104

site_idHC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE 3MW L 1005
ChainResidue
LLYS374
LASP379
LLYS386
LMET392
LPHE398
LASN457
LASP459
LGLU461
LLEU487
LTHR488
LGLY489
LLEU492
LZN1001
LCO31002
LZN1003

Functional Information from PROSITE/UniProt
site_idPS00631
Number of Residues8
DetailsCYTOSOL_AP Cytosol aminopeptidase signature. NTDAEGRL
ChainResidueDetails
AASN457-LEU464

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsACT_SITE: ACT_SITE => ECO:0000250|UniProtKB:P00727
ChainResidueDetails
ALYS386
AARG463
BLYS386
BARG463
CLYS386
CARG463
DLYS386
DARG463
ELYS386
EARG463
FLYS386
FARG463
GLYS386
GARG463
HLYS386
HARG463
ILYS386
IARG463
JLYS386
JARG463
KLYS386
KARG463
LLYS386
LARG463

site_idSWS_FT_FI2
Number of Residues36
DetailsBINDING: BINDING => ECO:0000269|PubMed:20133789, ECO:0000269|PubMed:21844374, ECO:0000269|PubMed:23713488, ECO:0000269|PubMed:25299353, ECO:0000269|PubMed:25645579, ECO:0000269|PubMed:35691342, ECO:0000269|Ref.13, ECO:0000312|PDB:3T8W, ECO:0007744|PDB:3KQX, ECO:0007744|PDB:3KQZ, ECO:0007744|PDB:3KR4, ECO:0007744|PDB:3KR5, ECO:0007744|PDB:4K3N, ECO:0007744|PDB:4R6T, ECO:0007744|PDB:4R76, ECO:0007744|PDB:4R7M, ECO:0007744|PDB:4X2T, ECO:0007744|PDB:7RIE, ECO:0007744|PDB:7T3V
ChainResidueDetails
ALYS374
AASP379
AGLU461
BLYS374
BASP379
BGLU461
CLYS374
CASP379
CGLU461
DLYS374
DASP379
DGLU461
ELYS374
EASP379
EGLU461
FLYS374
FASP379
FGLU461
GLYS374
GASP379
GGLU461
HLYS374
HASP379
HGLU461
ILYS374
IASP379
IGLU461
JLYS374
JASP379
JGLU461
KLYS374
KASP379
KGLU461
LLYS374
LASP379
LGLU461

site_idSWS_FT_FI3
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305|PubMed:20133789, ECO:0000305|PubMed:23713488, ECO:0007744|PDB:3KR5, ECO:0007744|PDB:4K3N
ChainResidueDetails
ALYS386
BLYS386
CLYS386
DLYS386
ELYS386
FLYS386
GLYS386
HLYS386
ILYS386
JLYS386
KLYS386
LLYS386

site_idSWS_FT_FI4
Number of Residues36
DetailsBINDING: BINDING => ECO:0000269|PubMed:35691342, ECO:0007744|PDB:7SRV
ChainResidueDetails
AASP394
AMET396
AASP399
BASP394
BMET396
BASP399
CASP394
CMET396
CASP399
DASP394
DMET396
DASP399
EASP394
EMET396
EASP399
FASP394
FMET396
FASP399
GASP394
GMET396
GASP399
HASP394
HMET396
HASP399
IASP394
IMET396
IASP399
JASP394
JMET396
JASP399
KASP394
KMET396
KASP399
LASP394
LMET396
LASP399

site_idSWS_FT_FI5
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:20133789, ECO:0000269|PubMed:21844374, ECO:0000269|PubMed:23713488, ECO:0000269|PubMed:25299353, ECO:0000269|PubMed:25645579, ECO:0000269|PubMed:35691342, ECO:0000269|Ref.13, ECO:0000312|PDB:3KQZ, ECO:0000312|PDB:3T8W, ECO:0007744|PDB:3KR4, ECO:0007744|PDB:3KR5, ECO:0007744|PDB:4K3N, ECO:0007744|PDB:4R6T, ECO:0007744|PDB:4R76, ECO:0007744|PDB:4R7M, ECO:0007744|PDB:4X2T, ECO:0007744|PDB:7RIE, ECO:0007744|PDB:7T3V
ChainResidueDetails
AASP459
BASP459
CASP459
DASP459
EASP459
FASP459
GASP459
HASP459
IASP459
JASP459
KASP459
LASP459

site_idSWS_FT_FI6
Number of Residues12
DetailsSITE: Essential for hexamer stabilization => ECO:0000269|PubMed:35691342
ChainResidueDetails
ALYS386
BLYS386
CLYS386
DLYS386
ELYS386
FLYS386
GLYS386
HLYS386
ILYS386
JLYS386
KLYS386
LLYS386

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PDB entries from 2024-06-12

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