Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0010124 | biological_process | phenylacetate catabolic process |
A | 0016874 | molecular_function | ligase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0010124 | biological_process | phenylacetate catabolic process |
B | 0016874 | molecular_function | ligase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
C | 0000166 | molecular_function | nucleotide binding |
C | 0010124 | biological_process | phenylacetate catabolic process |
C | 0016874 | molecular_function | ligase activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
D | 0000166 | molecular_function | nucleotide binding |
D | 0010124 | biological_process | phenylacetate catabolic process |
D | 0016874 | molecular_function | ligase activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 501 |
Chain | Residue |
A | CYS251 |
A | HIS258 |
A | CYS313 |
A | CYS315 |
site_id | AC2 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE AMP A 502 |
Chain | Residue |
A | PHE237 |
A | GLY238 |
A | MSE239 |
A | THR240 |
A | ASP304 |
A | ARG328 |
A | ILE334 |
A | ASN339 |
A | EDO510 |
A | HOH610 |
A | HOH683 |
A | ALA214 |
A | GLU215 |
A | PRO216 |
A | ASN235 |
A | SER236 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA A 503 |
Chain | Residue |
A | LYS128 |
A | GLY155 |
A | CYS156 |
A | LEU157 |
B | GLY87 |
B | HOH665 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 504 |
Chain | Residue |
A | ASN31 |
A | PHE43 |
A | ILE48 |
A | THR49 |
A | GLY50 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 505 |
Chain | Residue |
A | LYS45 |
D | TYR5 |
D | TRP6 |
D | EDO504 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 506 |
Chain | Residue |
A | MSE70 |
A | TYR74 |
A | PRO75 |
A | LEU78 |
A | PRO100 |
A | VAL102 |
A | HOH695 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 507 |
Chain | Residue |
A | GLN22 |
A | GLU261 |
A | VAL266 |
site_id | AC8 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 508 |
Chain | Residue |
A | SER166 |
A | ARG190 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO A 509 |
Chain | Residue |
A | ILE32 |
A | GLU293 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 510 |
Chain | Residue |
A | MSE239 |
A | GLU241 |
A | TYR300 |
A | THR302 |
A | ARG328 |
A | ASN339 |
A | AMP502 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 511 |
Chain | Residue |
A | SER135 |
A | ALA163 |
A | GLY164 |
A | TYR187 |
site_id | BC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 512 |
Chain | Residue |
A | LYS28 |
A | THR29 |
A | ILE32 |
A | LEU290 |
A | ASP291 |
A | ARG292 |
A | GLU293 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 501 |
Chain | Residue |
B | CYS251 |
B | HIS258 |
B | CYS313 |
B | CYS315 |
site_id | BC5 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE AMP B 502 |
Chain | Residue |
B | ALA214 |
B | GLU215 |
B | PRO216 |
B | ASN235 |
B | SER236 |
B | PHE237 |
B | GLY238 |
B | MSE239 |
B | THR240 |
B | ASP304 |
B | ILE325 |
B | ARG328 |
B | LYS424 |
B | HOH627 |
B | HOH644 |
B | HOH671 |
site_id | BC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE NA B 503 |
Chain | Residue |
A | GLY87 |
A | HOH638 |
B | LYS128 |
B | GLY155 |
B | HOH601 |
site_id | BC7 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO B 504 |
site_id | BC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 501 |
Chain | Residue |
C | CYS251 |
C | HIS258 |
C | CYS313 |
C | CYS315 |
site_id | BC9 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NA C 502 |
Chain | Residue |
C | ARG85 |
C | GLY87 |
D | LYS128 |
D | GLY155 |
D | CYS156 |
D | LEU157 |
C | LYS84 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA C 503 |
Chain | Residue |
C | LYS128 |
C | GLY155 |
C | HOH653 |
D | LYS84 |
D | GLY87 |
D | HOH613 |
site_id | CC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL C 504 |
Chain | Residue |
A | SER52 |
A | LYS61 |
C | LYS84 |
C | ARG85 |
site_id | CC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL C 505 |
Chain | Residue |
C | SER166 |
C | ARG190 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO C 506 |
Chain | Residue |
C | TYR5 |
C | TRP6 |
C | TYR122 |
site_id | CC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 507 |
Chain | Residue |
A | GLU275 |
C | HOH643 |
site_id | CC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO C 508 |
Chain | Residue |
C | THR66 |
C | LYS67 |
C | SER68 |
C | ARG303 |
site_id | CC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN D 501 |
Chain | Residue |
D | CYS251 |
D | HIS258 |
D | CYS313 |
D | CYS315 |
site_id | CC8 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE AMP D 502 |
Chain | Residue |
D | ALA214 |
D | GLU215 |
D | PRO216 |
D | ASN235 |
D | SER236 |
D | PHE237 |
D | GLY238 |
D | MSE239 |
D | THR240 |
D | ASP304 |
D | ARG328 |
D | LYS424 |
D | HOH624 |
D | HOH653 |
D | HOH656 |
site_id | CC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO D 503 |
Chain | Residue |
D | ARG25 |
D | LYS28 |
D | LEU290 |
D | GLU293 |
site_id | DC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO D 504 |
Chain | Residue |
A | EDO505 |
D | TRP6 |
D | GLU7 |
Functional Information from PROSITE/UniProt
site_id | PS00697 |
Number of Residues | 9 |
Details | DNA_LIGASE_A1 ATP-dependent DNA ligase AMP-binding site. DMKRDGVRI |
Chain | Residue | Details |
A | ASP82-ILE90 | |