Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0010124 | biological_process | phenylacetate catabolic process |
A | 0016874 | molecular_function | ligase activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
B | 0000166 | molecular_function | nucleotide binding |
B | 0010124 | biological_process | phenylacetate catabolic process |
B | 0016874 | molecular_function | ligase activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
C | 0000166 | molecular_function | nucleotide binding |
C | 0010124 | biological_process | phenylacetate catabolic process |
C | 0016874 | molecular_function | ligase activity |
C | 0046872 | molecular_function | metal ion binding |
C | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
D | 0000166 | molecular_function | nucleotide binding |
D | 0010124 | biological_process | phenylacetate catabolic process |
D | 0016874 | molecular_function | ligase activity |
D | 0046872 | molecular_function | metal ion binding |
D | 0047475 | molecular_function | phenylacetate-CoA ligase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 501 |
Chain | Residue |
A | CYS251 |
A | HIS258 |
A | CYS313 |
A | CYS315 |
site_id | AC2 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE ADP A 502 |
Chain | Residue |
A | GLY238 |
A | MSE239 |
A | THR240 |
A | ASP304 |
A | ARG328 |
A | GLY337 |
A | ASN339 |
A | K505 |
A | PGE508 |
A | HOH613 |
A | HOH622 |
A | HOH630 |
A | HOH649 |
A | HOH656 |
A | HOH706 |
A | HOH713 |
A | ALA214 |
A | GLU215 |
A | PRO216 |
A | ASN235 |
A | SER236 |
site_id | AC3 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE AMP A 503 |
Chain | Residue |
A | ALA214 |
A | GLU215 |
A | PRO216 |
A | ASN235 |
A | SER236 |
A | PHE237 |
A | GLY238 |
A | MSE239 |
A | THR240 |
A | ASP304 |
A | ARG328 |
A | ASN339 |
A | K505 |
A | PGE508 |
A | HOH613 |
A | HOH622 |
A | HOH649 |
A | HOH656 |
site_id | AC4 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE COA A 504 |
Chain | Residue |
A | SER135 |
A | ALA163 |
A | GLY164 |
A | ASN165 |
A | SER166 |
A | ILE184 |
A | TYR187 |
A | ARG190 |
A | LYS336 |
A | THR407 |
A | HOH671 |
A | HOH733 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE K A 505 |
Chain | Residue |
A | ALA214 |
A | GLY337 |
A | ASN339 |
A | ADP502 |
A | AMP503 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K A 506 |
Chain | Residue |
A | MSE83 |
A | LYS84 |
A | GLY87 |
A | HOH768 |
B | LYS128 |
B | GLY155 |
B | LEU157 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K A 507 |
Chain | Residue |
A | LYS128 |
A | GLY155 |
A | LEU157 |
B | MSE83 |
B | LYS84 |
B | GLY87 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PGE A 508 |
Chain | Residue |
A | SER136 |
A | ALA214 |
A | GLY238 |
A | GLY337 |
A | ADP502 |
A | AMP503 |
A | HOH772 |
site_id | AC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 509 |
Chain | Residue |
A | ASN165 |
A | SER166 |
A | TYR187 |
A | ARG190 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 510 |
Chain | Residue |
A | GLY47 |
A | SER52 |
A | LYS61 |
A | HOH679 |
C | LYS84 |
C | ARG85 |
site_id | BC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 511 |
Chain | Residue |
A | ARG393 |
A | ARG394 |
D | ARG393 |
D | ARG394 |
site_id | BC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 512 |
Chain | Residue |
A | ASN31 |
A | ALA34 |
A | ILE48 |
A | THR49 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO A 513 |
Chain | Residue |
D | TYR5 |
D | TRP6 |
D | EDO507 |
A | LYS45 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO A 514 |
Chain | Residue |
A | MSE70 |
A | TYR74 |
A | PRO75 |
A | VAL102 |
A | MSE295 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO A 515 |
Chain | Residue |
A | GLN22 |
A | GLU261 |
A | VAL266 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 501 |
Chain | Residue |
B | CYS251 |
B | HIS258 |
B | CYS313 |
B | CYS315 |
site_id | BC8 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE ADP B 502 |
Chain | Residue |
B | SER93 |
B | ALA214 |
B | PRO216 |
B | ASN235 |
B | SER236 |
B | PHE237 |
B | GLY238 |
B | MSE239 |
B | THR240 |
B | ASP304 |
B | ILE325 |
B | ARG328 |
B | LYS424 |
B | EDO505 |
B | HOH606 |
B | HOH645 |
B | HOH719 |
B | HOH720 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 B 503 |
Chain | Residue |
B | ASN165 |
B | SER166 |
B | TYR187 |
B | ARG190 |
site_id | CC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO B 504 |
Chain | Residue |
B | ASN46 |
B | ARG60 |
B | LYS61 |
site_id | CC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO B 505 |
Chain | Residue |
B | GLY143 |
B | HIS182 |
B | ALA214 |
B | ADP502 |
B | HOH653 |
B | HOH720 |
site_id | CC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE EDO B 506 |
site_id | CC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN C 501 |
Chain | Residue |
C | CYS251 |
C | HIS258 |
C | CYS313 |
C | CYS315 |
site_id | CC5 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE AMP C 502 |
Chain | Residue |
C | ALA214 |
C | GLU215 |
C | PRO216 |
C | ASN235 |
C | SER236 |
C | GLY238 |
C | MSE239 |
C | THR240 |
C | ASP304 |
C | ARG328 |
C | ILE334 |
C | ASN339 |
C | K504 |
C | HOH627 |
C | HOH635 |
C | HOH681 |
site_id | CC6 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE COA C 503 |
Chain | Residue |
A | HOH760 |
C | SER135 |
C | GLY164 |
C | ASN165 |
C | SER166 |
C | ILE184 |
C | TYR187 |
C | ARG190 |
C | LYS336 |
C | THR407 |
C | HOH628 |
site_id | CC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K C 504 |
Chain | Residue |
C | ALA214 |
C | GLY337 |
C | ASN339 |
C | AMP502 |
site_id | CC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K C 505 |
Chain | Residue |
C | MSE83 |
C | LYS84 |
C | GLY87 |
C | HOH612 |
D | LYS128 |
D | GLY155 |
D | LEU157 |
site_id | CC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 C 506 |
Chain | Residue |
C | SER166 |
C | TYR187 |
C | ARG190 |
site_id | DC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 C 507 |
Chain | Residue |
B | ARG393 |
C | ARG393 |
C | ARG394 |
C | HOH694 |
site_id | DC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 508 |
site_id | DC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 509 |
Chain | Residue |
A | GLU275 |
C | GLU293 |
site_id | DC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO C 510 |
Chain | Residue |
C | THR66 |
C | LYS67 |
C | SER68 |
C | ARG303 |
C | ASP330 |
C | HOH647 |
site_id | DC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN D 501 |
Chain | Residue |
D | CYS251 |
D | HIS258 |
D | CYS313 |
D | CYS315 |
site_id | DC6 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE ADP D 502 |
Chain | Residue |
D | ALA214 |
D | PRO216 |
D | ASN235 |
D | SER236 |
D | PHE237 |
D | GLY238 |
D | MSE239 |
D | THR240 |
D | ASP304 |
D | ILE325 |
D | ARG328 |
D | LYS424 |
D | PEG504 |
D | HOH637 |
D | HOH731 |
D | HOH733 |
D | HOH739 |
site_id | DC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K D 503 |
Chain | Residue |
C | LYS128 |
C | GLY155 |
C | LEU157 |
D | MSE83 |
D | LYS84 |
D | GLY87 |
D | HOH736 |
site_id | DC8 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PEG D 504 |
Chain | Residue |
D | SER136 |
D | PHE141 |
D | HIS182 |
D | ILE184 |
D | ALA214 |
D | ADP502 |
D | HOH617 |
D | HOH737 |
site_id | DC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 505 |
Chain | Residue |
D | ASN165 |
D | SER166 |
D | TYR187 |
D | ARG190 |
D | HOH634 |
site_id | EC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE EDO D 506 |
Chain | Residue |
D | ARG60 |
D | LYS61 |
D | ARG299 |
site_id | EC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE EDO D 507 |
Chain | Residue |
A | EDO513 |
D | TRP6 |
D | GLU7 |
D | ASN115 |
Functional Information from PROSITE/UniProt
site_id | PS00697 |
Number of Residues | 9 |
Details | DNA_LIGASE_A1 ATP-dependent DNA ligase AMP-binding site. DMKRDGVRI |
Chain | Residue | Details |
A | ASP82-ILE90 | |