4QRN
HIGH-RESOLUTION CRYSTAL STRUCTURE of 5-CARBOXYVANILLATE DECARBOXYLASE (TARGET EFI-505250) FROM NOVOSPHINGOBIUM AROMATICIVORANS DSM 12444 COMPLEXED WITH MANGANESE AND 4-HYDROXY-3-METHOXY-5-NITROBENZOIC ACID
Replaces: 4INGFunctional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016831 | molecular_function | carboxy-lyase activity |
| A | 0019748 | biological_process | secondary metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 1901360 | biological_process | organic cyclic compound metabolic process |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016831 | molecular_function | carboxy-lyase activity |
| B | 0019748 | biological_process | secondary metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 1901360 | biological_process | organic cyclic compound metabolic process |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016831 | molecular_function | carboxy-lyase activity |
| C | 0019748 | biological_process | secondary metabolic process |
| C | 0046872 | molecular_function | metal ion binding |
| C | 1901360 | biological_process | organic cyclic compound metabolic process |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0016829 | molecular_function | lyase activity |
| D | 0016831 | molecular_function | carboxy-lyase activity |
| D | 0019748 | biological_process | secondary metabolic process |
| D | 0046872 | molecular_function | metal ion binding |
| D | 1901360 | biological_process | organic cyclic compound metabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MN A 401 |
| Chain | Residue |
| A | GLU19 |
| A | HIS188 |
| A | ASP314 |
| A | 1DF402 |
| A | HOH572 |
| site_id | AC2 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE 1DF A 402 |
| Chain | Residue |
| A | SER91 |
| A | HIS188 |
| A | PHE212 |
| A | HIS241 |
| A | ASP314 |
| A | TYR317 |
| A | MN401 |
| A | HOH512 |
| A | HOH535 |
| A | HOH546 |
| A | HOH610 |
| B | ARG252 |
| B | MET256 |
| A | GLU19 |
| A | TYR51 |
| A | ARG58 |
| A | THR90 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 403 |
| Chain | Residue |
| A | ASP41 |
| A | GLN162 |
| A | PRO193 |
| A | ASP194 |
| A | CL406 |
| A | HOH692 |
| A | HOH850 |
| A | HOH916 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE GOL A 404 |
| Chain | Residue |
| A | ASP331 |
| A | HOH861 |
| A | HOH887 |
| A | HOH997 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CL A 405 |
| Chain | Residue |
| A | VAL179 |
| A | TYR232 |
| A | PRO233 |
| A | SER234 |
| A | HOH815 |
| A | HOH961 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 406 |
| Chain | Residue |
| A | ASP194 |
| A | SER195 |
| A | GOL403 |
| A | HOH768 |
| B | HOH707 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL A 407 |
| Chain | Residue |
| A | TYR121 |
| A | PRO122 |
| A | ASP123 |
| A | HOH843 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT A 408 |
| Chain | Residue |
| A | GLN134 |
| A | ARG164 |
| A | HOH680 |
| A | HOH725 |
| A | HOH925 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MN B 401 |
| Chain | Residue |
| B | GLU19 |
| B | HIS188 |
| B | ASP314 |
| B | 1DF402 |
| B | HOH564 |
| site_id | BC1 |
| Number of Residues | 17 |
| Details | BINDING SITE FOR RESIDUE 1DF B 402 |
| Chain | Residue |
| A | ARG252 |
| A | MET256 |
| B | GLU19 |
| B | TYR51 |
| B | ARG58 |
| B | THR90 |
| B | SER91 |
| B | HIS188 |
| B | PHE212 |
| B | HIS241 |
| B | ASP314 |
| B | TYR317 |
| B | MN401 |
| B | HOH512 |
| B | HOH515 |
| B | HOH540 |
| B | HOH584 |
| site_id | BC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 403 |
| Chain | Residue |
| B | ASP41 |
| B | GLN162 |
| B | PRO193 |
| B | ASP194 |
| B | HOH822 |
| B | HOH843 |
| B | HOH966 |
| site_id | BC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL B 404 |
| Chain | Residue |
| A | SER263 |
| A | HOH664 |
| B | ARG58 |
| B | HOH880 |
| site_id | BC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MN C 401 |
| Chain | Residue |
| C | GLU19 |
| C | HIS188 |
| C | ASP314 |
| C | 1DF402 |
| C | HOH575 |
| site_id | BC5 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE 1DF C 402 |
| Chain | Residue |
| C | ASP314 |
| C | TYR317 |
| C | MN401 |
| C | HOH512 |
| C | HOH536 |
| C | HOH593 |
| C | HOH614 |
| D | ARG252 |
| D | MET256 |
| C | GLU19 |
| C | TYR51 |
| C | ARG58 |
| C | THR90 |
| C | SER91 |
| C | HIS188 |
| C | HIS241 |
| site_id | BC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL C 403 |
| Chain | Residue |
| C | ASP41 |
| C | GLN162 |
| C | PRO193 |
| C | ASP194 |
| C | HOH684 |
| C | HOH755 |
| C | HOH1006 |
| site_id | BC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL C 404 |
| Chain | Residue |
| C | TYR255 |
| C | GLN258 |
| C | ALA259 |
| C | ARG262 |
| C | HOH534 |
| C | HOH691 |
| C | HOH819 |
| C | HOH921 |
| site_id | BC8 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 405 |
| Chain | Residue |
| C | ARG58 |
| D | SER263 |
| D | HOH674 |
| site_id | BC9 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL C 406 |
| Chain | Residue |
| C | GLU169 |
| C | ARG268 |
| C | HOH753 |
| site_id | CC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE MN D 401 |
| Chain | Residue |
| D | GLU19 |
| D | HIS188 |
| D | ASP314 |
| D | 1DF402 |
| D | HOH542 |
| site_id | CC2 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE 1DF D 402 |
| Chain | Residue |
| C | ARG252 |
| C | MET256 |
| D | GLU19 |
| D | TYR51 |
| D | ARG58 |
| D | THR90 |
| D | SER91 |
| D | HIS188 |
| D | HIS241 |
| D | ASP314 |
| D | TYR317 |
| D | MN401 |
| D | HOH509 |
| D | HOH545 |
| D | HOH582 |
| D | HOH610 |
| site_id | CC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL D 403 |
| Chain | Residue |
| D | ASP41 |
| D | GLN162 |
| D | PRO193 |
| D | ASP194 |
| D | HOH691 |
| D | HOH800 |
| D | HOH809 |
| D | HOH881 |
| site_id | CC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL D 404 |
| Chain | Residue |
| D | TYR121 |
| D | PRO122 |
| D | ASP123 |
| site_id | CC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL D 405 |
| Chain | Residue |
| D | VAL179 |
| D | TYR232 |
| D | PRO233 |
| D | SER234 |
