4QD3
Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with 5-azacytidine at 1.89 Angstrom resolution
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000049 | molecular_function | tRNA binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0004045 | molecular_function | peptidyl-tRNA hydrolase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006515 | biological_process | protein quality control for misfolded or incompletely synthesized proteins |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0072344 | biological_process | rescue of stalled ribosome |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE 5AE A 201 |
| Chain | Residue |
| A | HIS22 |
| A | GLU161 |
| A | GOL202 |
| A | HOH314 |
| A | HOH474 |
| A | LEU97 |
| A | GLY113 |
| A | GLY114 |
| A | HIS115 |
| A | ASN116 |
| A | VAL147 |
| A | SER148 |
| A | VAL151 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL A 202 |
| Chain | Residue |
| A | ASP95 |
| A | GLU96 |
| A | LEU97 |
| A | GLY113 |
| A | 5AE201 |
| A | HOH315 |
| A | HOH474 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25101795","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25101795","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Site: {"description":"Discriminates between blocked and unblocked aminoacyl-tRNA","evidences":[{"source":"HAMAP-Rule","id":"MF_00083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"25101795","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Site: {"description":"Stabilizes the basic form of H active site to accept a proton","evidences":[{"source":"HAMAP-Rule","id":"MF_00083","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
