4QBH
Crystal structure of a stable adenylate kinase variant AKlse5
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004017 | molecular_function | adenylate kinase activity |
A | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006139 | biological_process | nucleobase-containing compound metabolic process |
A | 0008270 | molecular_function | zinc ion binding |
A | 0009123 | biological_process | nucleoside monophosphate metabolic process |
A | 0009132 | biological_process | nucleoside diphosphate metabolic process |
A | 0009165 | biological_process | nucleotide biosynthetic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
A | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
A | 0044209 | biological_process | AMP salvage |
A | 0046872 | molecular_function | metal ion binding |
A | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
A | 0050145 | molecular_function | nucleoside monophosphate kinase activity |
B | 0004017 | molecular_function | adenylate kinase activity |
B | 0004550 | molecular_function | nucleoside diphosphate kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006139 | biological_process | nucleobase-containing compound metabolic process |
B | 0008270 | molecular_function | zinc ion binding |
B | 0009123 | biological_process | nucleoside monophosphate metabolic process |
B | 0009132 | biological_process | nucleoside diphosphate metabolic process |
B | 0009165 | biological_process | nucleotide biosynthetic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0016776 | molecular_function | phosphotransferase activity, phosphate group as acceptor |
B | 0019205 | molecular_function | nucleobase-containing compound kinase activity |
B | 0044209 | biological_process | AMP salvage |
B | 0046872 | molecular_function | metal ion binding |
B | 0046940 | biological_process | nucleoside monophosphate phosphorylation |
B | 0050145 | molecular_function | nucleoside monophosphate kinase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 43 |
Details | BINDING SITE FOR RESIDUE AP5 A 301 |
Chain | Residue |
A | PRO9 |
A | PHE35 |
A | ARG36 |
A | MET53 |
A | ASP57 |
A | VAL59 |
A | THR64 |
A | GLY85 |
A | PHE86 |
A | ARG88 |
A | GLN92 |
A | GLY10 |
A | ARG123 |
A | ARG127 |
A | THR136 |
A | TYR137 |
A | HIS138 |
A | PHE141 |
A | ARG160 |
A | ARG171 |
A | GLY197 |
A | GLN199 |
A | ALA11 |
A | MET201 |
A | MG303 |
A | HOH403 |
A | HOH411 |
A | HOH414 |
A | HOH421 |
A | HOH438 |
A | HOH520 |
A | HOH530 |
A | HOH599 |
A | GLY12 |
A | HOH600 |
A | HOH601 |
A | HOH608 |
A | HOH619 |
A | LYS13 |
A | GLY14 |
A | THR15 |
A | THR31 |
A | GLY32 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 302 |
Chain | Residue |
A | CYS130 |
A | CYS133 |
A | CYS150 |
A | CYS153 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 303 |
Chain | Residue |
A | AP5301 |
A | HOH599 |
A | HOH600 |
A | HOH601 |
A | HOH602 |
A | HOH619 |
site_id | AC4 |
Number of Residues | 40 |
Details | BINDING SITE FOR RESIDUE AP5 B 301 |
Chain | Residue |
B | PRO9 |
B | GLY10 |
B | ALA11 |
B | GLY12 |
B | LYS13 |
B | GLY14 |
B | THR15 |
B | THR31 |
B | GLY32 |
B | PHE35 |
B | ARG36 |
B | MET53 |
B | ASP57 |
B | LEU58 |
B | VAL59 |
B | THR64 |
B | GLY85 |
B | PHE86 |
B | ARG88 |
B | GLN92 |
B | ARG123 |
B | ARG127 |
B | THR136 |
B | TYR137 |
B | HIS138 |
B | PHE141 |
B | ARG160 |
B | ARG171 |
B | GLN199 |
B | MET201 |
B | MG303 |
B | HOH407 |
B | HOH410 |
B | HOH412 |
B | HOH414 |
B | HOH428 |
B | HOH433 |
B | HOH563 |
B | HOH564 |
B | HOH566 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 302 |
Chain | Residue |
B | CYS130 |
B | CYS133 |
B | CYS150 |
B | CYS153 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG B 303 |
Chain | Residue |
B | HOH564 |
B | HOH565 |
B | HOH566 |
B | AP5301 |
B | HOH563 |
Functional Information from PROSITE/UniProt
site_id | PS00113 |
Number of Residues | 12 |
Details | ADENYLATE_KINASE Adenylate kinase signature. FLLDGFPRtvaQ |
Chain | Residue | Details |
A | PHE81-GLN92 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 30 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00235, ECO:0000269|PubMed:9715904 |
Chain | Residue | Details |
A | GLY10 | |
A | THR136 | |
A | CYS150 | |
A | CYS153 | |
A | ARG160 | |
A | ARG171 | |
A | GLN199 | |
B | GLY10 | |
B | THR31 | |
B | ARG36 | |
B | ASP57 | |
A | THR31 | |
B | GLY85 | |
B | GLN92 | |
B | ARG127 | |
B | CYS130 | |
B | CYS133 | |
B | THR136 | |
B | CYS150 | |
B | CYS153 | |
B | ARG160 | |
B | ARG171 | |
A | ARG36 | |
B | GLN199 | |
A | ASP57 | |
A | GLY85 | |
A | GLN92 | |
A | ARG127 | |
A | CYS130 | |
A | CYS133 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 5 |
Details | M-CSA 290 |
Chain | Residue | Details |
A | LYS13 | electrostatic stabiliser |
A | ARG88 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor |
A | ARG127 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor |
A | ARG160 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor |
A | ARG171 | electrostatic stabiliser |
site_id | MCSA2 |
Number of Residues | 5 |
Details | M-CSA 290 |
Chain | Residue | Details |
B | LYS13 | electrostatic stabiliser |
B | ARG88 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor |
B | ARG127 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor |
B | ARG160 | attractive charge-charge interaction, electrostatic stabiliser, hydrogen bond donor |
B | ARG171 | electrostatic stabiliser |