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4Q3N

Crystal structure of MGS-M5, a lactate dehydrogenase enzyme from a Medee basin deep-sea metagenome library

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004459molecular_functionL-lactate dehydrogenase activity
A0005737cellular_componentcytoplasm
A0006089biological_processlactate metabolic process
A0006090biological_processpyruvate metabolic process
A0006096biological_processglycolytic process
A0016491molecular_functionoxidoreductase activity
A0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
A0019752biological_processcarboxylic acid metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE NA A 401
ChainResidue
AILE198
AMET201
AILE204
AHOH708
AHOH709
AHOH711

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 403
ChainResidue
AARG2
ASER4
AGLU30

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT A 404
ChainResidue
ALYS192
AHIS284
AHOH555

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT A 405
ChainResidue
ALYS58
AILE163
AASP164
AGLU249
AASN250
AHOH602
AHOH679

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 406
ChainResidue
ASER4
AARG57
APHE246
AASN247
AHOH569

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE ACT A 407
ChainResidue
AGLN159
AHOH847

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 408
ChainResidue
ALEU214
ALYS215
AASP218
AASP218
AHOH576

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 409
ChainResidue
AASN121
ALEU148
AHIS176
AILE234
AHOH515

site_idAC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PGE A 410
ChainResidue
AASN113
AARG140

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PGE A 411
ChainResidue
ALYS105
ALYS132
AGLU133
AGLY135

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 412
ChainResidue
ASER185
AASN186
APRO193
AASP196
ALYS289

site_idBC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 413
ChainResidue
AMET1
AASN3
AASP71
AALA72
AHOH751

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 414
ChainResidue
AASN291
AGLU292
AHOH543
AHOH624

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 415
ChainResidue
AASP35
ALYS38
AGLY64
AASP65
ATYR66

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A 416
ChainResidue
AGLY111
AHOH707
AHOH783

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE TRS A 417
ChainResidue
AGLY261
ATYR263
AASP264
ACYS265
AASP267
AHOH705

Functional Information from PROSITE/UniProt
site_idPS00064
Number of Residues7
DetailsL_LDH L-lactate dehydrogenase active site. LGEHGDS
ChainResidueDetails
ALEU173-SER179

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PDB entries from 2024-07-24

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