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4PPZ

Crystal structure of zinc-bound succinyl-diaminopimelate desuccinylase from Neisseria meningitidis MC58

Functional Information from GO Data
ChainGOidnamespacecontents
A0006526biological_processL-arginine biosynthetic process
A0008270molecular_functionzinc ion binding
A0008652biological_processamino acid biosynthetic process
A0008777molecular_functionacetylornithine deacetylase activity
A0009014molecular_functionsuccinyl-diaminopimelate desuccinylase activity
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016787molecular_functionhydrolase activity
A0019877biological_processdiaminopimelate biosynthetic process
A0046872molecular_functionmetal ion binding
A0050897molecular_functioncobalt ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ZN A 601
ChainResidue
AHIS68
AASP101
AGLU135
AGLU136
AGLU164
AZN602
AHOH819

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 602
ChainResidue
AHIS350
AZN601
AHOH819
AHOH841
AASP101
AGLU136

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE PO4 A 603
ChainResidue
AHIS195
AASN246
AARG259

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues5
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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